Detailed information on ENST00000578307

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000517408 antisense antisense ENST00000578307 532 297 noncoding Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000578307 540 316 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000578307 502 297 UTR3 Trans
TCONS_00102930 suppressor of cytokine signaling 7 novel protein coding ENST00000578307 700 653 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000578307 511 297 UTR3 Trans

Sequence

>ENST00000578307 (2121 nt)
TTATAGTTATTCTTTTCCTTATGAAAAACAAAAAGGGGACTGGGCGTGGTGGCTAACACCTGTAATCCCAGCACTTGGGGAGGCTGAGGCGGGTGGATCA<br />CAAGGTCAGGAGTTCGAGACCAGACTGGCCAAAAGGATGAAACCCCATCTCTCTACTAAAAATACAAAAAATTAGCCAGGTGCGGTGGGGCGCACCAGTA<br />ATCCCAACTACTAGGGAGGCTGAGGTAGGAGAATAGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGAGCCACGGCACTCTAGCCCAGGTG<br />ACAGTGTGAGACTCTGTCTCAGAAAAAAAAGAAAAACGGGATCGAGATGGTTTGCAGGATTAGCAAGTGATAGAGATATATTGAAGACATAGAAAGCCAG<br />TGTGGTTGCTCACACCTATAATCCCAGCACTGTGGGAGGCCAAGGCAGGAGGATCACTTGAGTCAATGAGTTAGAGACCAACCTGGGCAGCAAAGTGAGA<br />CCCCATCTCTACAAAAAAATTTTTTAAAAATCAGCCAGGTACGGTGGTGCACACCTGTAATCCCAGCTACTAAGGAGGCTGAGGCAGGAGAATCTCTTGA<br />ACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGAGCCACGGCACTCTAGCCCAGGTGACAGTGTGAGACTCCATCTCAGAACAAAAAGAATAACAGGA<br />TAGGGATGGTTTGCAGGATTATCAAGTGATACAGATGTACTGAAGACACAGAAAGCCAGTGTGGTTGCTCACATCTATAATCCCAACACTTTGGGAGGCC<br />AGGGCAGGAGGATCACTTGAGTTGACGAGTTAGAGACCAACCTGGGCAACAAAGTGAGACCCCCACCTCTACAAAACATTAAAAAAAAATGAGCTGCACA<br />TGTTGGCACGCACTTGTAATCCCAGCTACTTGGGAGGCTGAGGTGAGAGGATCACTTGAGCACAGGAGGTTACAGTGAGCTATGATCACGCCACTCGACA<br />CCAGCCTGAATGACAGAGCGAGACCCTGTCTCAAAAAAGTGGGGGGAAATAAAAGGATATAGTGCACTGGATTGAAACTTTCTCCTGTCGTTATCATAAT<br />CAGAAGAATTGAAGTAACTAAAAAGAGAATCATAGTCTCAATGTGTGCTTGAATGTTATCTAACATCACGTCTCTGCTACCTCATCATTAACCAGCTGTG<br />GTAATGATTCCACACTTTGAACCCATCCCACCTGTTGACAGAAGCGATTGCAATGCCAGCATCACTCAGTGACGGCTCATCATGTAGGGCCCAGAATACT<br />GATTTTGTGACTTCTAAGCTTGTGCTCCATTCCCAACACAAAGTCTTCTGACCAGCCTTTGAGTACCATTATTGTAGAGGAAGCTCATCTTAGGTAACTA<br />TTACTAGAGCAGAAATCACTTAATATAAAATATTTCATGTATCAAATTTAAAACTCACTTTTGGGTTCATTGATGTAGTAACTCAACCAGGAAACTTAAA<br />TGGAATTAGTGTTTTCACTGACAATAATGATGCTGCTTTTTCATTATAGGCCCATAAGATGGCCTGGCCTTTCCTTGAACCAGTAGACCCTAATGATGCA<br />CCAGATTATTATGGTGTTATTAAGGAACCTATGGACCTTGCCACCATGGAAGAAAGAGTACAAAGACGATATTATGAAAAGCTGACGGAATTTGTGGCAG<br />ATATGACCAAAATTTTTGATAACTGTCGTTACTACAATCCAAGTGACTCCCCATTTTACCAGTGTGCAGAAGTTCTCGAATCATTCTTTGTACAGAAATT<br />GAAAGGCTTCAAAGCTAGCAGGTCTCATAACAACAAACTGCAGTCTACAGCTTCTTAAAGTTCAGCGTGTTAACCTAACATAAAACACAGCAAGAATCTG<br />GTTGTCTGAACTATTTTAAATTAAGGAGCCAGATGTTTTTAGTCAGGCTATCCTGACAAGACTTGACCTAAACTTCGTTTTTATTGGTCATAACAGTCCA<br />ATTATATTCTTGGCCAATTTTGTCCAACGGACAAGAAAAAAGCAAAGTCAACGACACCATTATCTTGTCAAGATCAGATGGTTTTACTATTGTGGCAGAA<br />GCGAGAAAACTTTGTTTATTG

Expression



Full and truncated open reading frames discovered in ENST00000578307

In silico ORF/peptide predictions
>peptide 1 (99 aa)
MAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKASRSHNNKLQSTAS

>peptide 2 (57 aa)
YSYSFPYEKQKGDWAWWLTPVIPALGEAEAGGSQGQEFETRLAKRMKPHLSTKNTKN


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT021659 (Evalue: 1.0E-60)

Best hit to Swiss-Prot:
sp|Q12830|BPTF_HUMAN (Evalue: 2.0E-57)