Detailed information on ENST00000578726

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000327268 solute carrier family 16, member 6 protein coding ENST00000578726 1304 431 CDS Cis
ENST00000375140 coiled-coil domain containing 153 retained intron ENST00000578726 501 278 noncoding Trans
ENST00000415318 coiled-coil domain containing 153 protein coding ENST00000578726 501 278 UTR5 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000578726 528 294 CDS Trans
ENST00000580666 solute carrier family 16, member 6 protein coding ENST00000578726 1304 431 CDS Cis
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000578726 627 282 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000578726 522 287 UTR3 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000578726 584 297 UTR3 Trans

Sequence

>TCONS_00140000 (700 nt)
GTCAGGACCGCGACGGCAGCAGAGCATGTCTAGACAACTTCTGAGCCAAAGAGGAACACTTACCAGAGATGATGCCGATGGCGACGTACATATGAGAAAC
CTCTTGTGAGAAGGAGGCGGCCACCATCCCGGTGCTGACAAGTAGCCCCCCCAACATCACTACCAGACGGTGTCCGAAACGATTGCTCAGGACTGTGGCG
AGGGGAGCTGCCGGGAAAGAACAAAACGATATTTTAACTCACAGAGGCTTCAGGGTTAGCTGCCATAAGACTCCTTCCTCCACGTCTTGCACATGGAGAG
ATGATGTCGAATATAAATATGGCCGAGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTTGAGGACGGAGGATCGCTTGAGCCCAGGAGTTC
AAGACTAGCCCGGGCAACATGGTGAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCAGGCATGGTGGTGTGCACCTGTAGTCCCAGCTACTTGGCAG
GCAGAGATGGGAGGATTGTTTGAGCCTGGGAGGCAGACGATGCAGTGAGCCAAGATTGCACCACTGCACTCCATACTGGGTGACAGAGTGAGACCCTGTC
TCAAGAAAAAACAAAACCAAACCATAACACATTTCATGCAAAGTCAGTGCAGGAATTATTTTACTATTTGTTCAAATTCAACACGATTTGTCAGACTCCT
G

Expression



Full and truncated open reading frames discovered in TCONS_00140000

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.