Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000327268 | solute carrier family 16, member 6 | protein coding | ENST00000578726 | 1304 | 431 | CDS | Cis | |
ENST00000375140 | coiled-coil domain containing 153 | retained intron | ENST00000578726 | 501 | 278 | noncoding | Trans | |
ENST00000415318 | coiled-coil domain containing 153 | protein coding | ENST00000578726 | 501 | 278 | UTR5 | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000578726 | 528 | 294 | CDS | Trans | |
ENST00000580666 | solute carrier family 16, member 6 | protein coding | ENST00000578726 | 1304 | 431 | CDS | Cis | |
TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000578726 | 627 | 282 | UTR3 | Trans | |
TCONS_00082423 | transcribed_processed_pseudogene | novel protein coding | ENST00000578726 | 522 | 287 | UTR3 | Trans | |
TCONS_00140000 | long intergenic non-protein coding RNA 152 | novel protein coding | ENST00000578726 | 584 | 297 | UTR3 | Trans |
>TCONS_00140000 (700 nt)
GTCAGGACCGCGACGGCAGCAGAGCATGTCTAGACAACTTCTGAGCCAAAGAGGAACACTTACCAGAGATGATGCCGATGGCGACGTACATATGAGAAAC
CTCTTGTGAGAAGGAGGCGGCCACCATCCCGGTGCTGACAAGTAGCCCCCCCAACATCACTACCAGACGGTGTCCGAAACGATTGCTCAGGACTGTGGCG
AGGGGAGCTGCCGGGAAAGAACAAAACGATATTTTAACTCACAGAGGCTTCAGGGTTAGCTGCCATAAGACTCCTTCCTCCACGTCTTGCACATGGAGAG
ATGATGTCGAATATAAATATGGCCGAGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTTGAGGACGGAGGATCGCTTGAGCCCAGGAGTTC
AAGACTAGCCCGGGCAACATGGTGAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCAGGCATGGTGGTGTGCACCTGTAGTCCCAGCTACTTGGCAG
GCAGAGATGGGAGGATTGTTTGAGCCTGGGAGGCAGACGATGCAGTGAGCCAAGATTGCACCACTGCACTCCATACTGGGTGACAGAGTGAGACCCTGTC
TCAAGAAAAAACAAAACCAAACCATAACACATTTCATGCAAAGTCAGTGCAGGAATTATTTTACTATTTGTTCAAATTCAACACGATTTGTCAGACTCCT
G
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.