Detailed information on ENST00000580101

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000580101 1052 388 UTR5 Trans

Sequence

>TCONS_00213191 (574 nt)
AGAAGCAGCTGAGTGTCTCCTGATACCCGGATGTGAGGCGATCCGCTGGCGCTAGTCTGACCCTCCGCCAGGCAAAAGGAAGGAATCCTGAGAGTCCCCA
TATCACATTTTGAGCACTACTGCTTTAAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTATTTTTTTGGTGGAGA
CGGGGTTTCGCTGTGTTGGCTGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCACCAGCCTCGCCTCCAGAGGTGCCGGGATTGCAGACGGTGTCTGG
TTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGT
GCCCAGAGTGCAGCCTCTGCCCGGCTGCCACCCCGTCTAGGAAGTGAGGAGCGTCTCTGCCTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCC
TGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTT

Expression



Full and truncated open reading frames discovered in TCONS_00213191

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.