| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000482603 | glyoxylate reductase/hydroxypyruvate red... | processed transcript | ENST00000580220 | 566 | 278 | noncoding | Trans | |
| TCONS_00009834 | SRY (sex determining region Y)-box 13 | novel protein coding | ENST00000580220 | 617 | 275 | UTR3 | Trans | |
| TCONS_00088780 | synaptotagmin XVII | novel protein coding | ENST00000580220 | 612 | 280 | UTR3 | Trans | |
| TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | ENST00000580220 | 597 | 273 | UTR3 | Trans | |
| TCONS_00098643 | fatty acid 2-hydroxylase | novel protein coding | ENST00000580220 | 606 | 277 | UTR5 | Trans | |
| TCONS_00098644 | fatty acid 2-hydroxylase | novel protein coding | ENST00000580220 | 606 | 277 | UTR3 | Trans | |
| TCONS_00098645 | fatty acid 2-hydroxylase | novel protein coding | ENST00000580220 | 606 | 277 | UTR3 | Trans | |
| TCONS_00098647 | fatty acid 2-hydroxylase | novel protein coding | ENST00000580220 | 606 | 277 | UTR3 | Trans | |
| TCONS_00150696 | septin 10 | novel protein coding | ENST00000580220 | 605 | 276 | UTR3 | Trans | |
| TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000580220 | 624 | 275 | UTR5 | Trans |
>ENST00000580220 (758 nt)
ATACCTTCTCGAAACAAAAGATTTTCCTACCTGCTTATACTTGGTAACCGAGGGAATTTCTAAGACTTCTTGCTCATTTCTGAGTATTGTCTTTATATCC<br />TGACACTATGAATGCTACTTGGATGCCTCTTAAGAGTCTCTCTTTGTTGCCCAGGCTGGAGTACAGTGGGGTGATCTCAGCTCACTGCAACCTCCTCCTC<br />CTAGGTTCAAGTGATTCTTCTGCCTTAGCCTTCCAAGTAGCTGGAGTTACAGGTGCTCGCCACCATGCCTAGCTAATTTTTACATTTTTGGTAGAGATGG<br />GGTTTCTCCACATTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGGTCCACCCACCTCGGCCTCTTAAAGTGCTGAGATTGCAGGCGTGAGCCACCG<br />CACCTGGTCTGAAGATCCCATCTCTAAGATCACATTCTGAGGGTCTCTTCTGCAGGGTCCCCATGAATTGTGGCTGAAGTTGTGCACAAACAAGTATCTC<br />CAGTGACAGGAGTGCCTTCTGAGGCAGCCATTGCATCTTCATCTGCTGACACTCTGCTAGGCTGACTTCTGTAGTTTTCACCACTGATCTTCAGTCCACC<br />TCACAGAGCTCTATAAAACGCTTAAATCCTCTTTACATCATAGACTTTCAGCTACTTGAAGATAGCCATCAGCCGCTACGTGACTCTTTTCTCCAGGATC<br />TCCCTAATACTATGAACGCGGCAGAGATAACGGACAAGCTCGGCCTCCATTCCCTCCG
In silico ORF/peptide predictions
>peptide 1 (54 aa)
MNATWMPLKSLSLLPRLEYSGVISAHCNLLLLGSSDSSALAFQVAGVTGARHHA
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.