Detailed information on ENST00000580806

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000580806 501 290 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus rec... protein coding ENST00000580806 519 252 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000580806 501 290 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000580806 518 264 noncoding Trans
TCONS_00009095 xenotropic and polytropic retrovirus rec... novel protein coding ENST00000580806 519 252 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000580806 620 293 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element bind... novel protein coding ENST00000580806 612 293 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element bind... novel protein coding ENST00000580806 612 293 UTR3 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000580806 570 292 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000580806 610 299 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000580806 610 299 UTR3 Trans
TCONS_00109814 lincRNA novel protein coding ENST00000580806 507 289 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000580806 543 287 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000580806 602 296 UTR5 Trans

Sequence

>ENST00000580806 (3187 nt)
ATGTCCATTTGTTCCAGGGTATAGTTTAAATCCATTGTTTCTTTGTTGACTTTCTGTCTTGATGACCTGTCTAGAGCTGTCAGTGGAGTATTGAAGTTTC<br />CCACTGTTATTGTGTTGCTGTGTATCTCATTTCTTAGGTCTAGTAGTAATTGTTTTATAAATTTGGGAGCTCCAGTGTTAGGTGCATATATTTTTAGGAC<br />TGTGATATTTTCCTGTTGGACAAAGCGTTTTATCATTACATAATGTCCCCCTTTGTCTTTTTAAACTGCTGTTGCTGTAAAGTTTGTTTTAATGATATAA<br />GAATAGCTACTTTTGCTTGCTGTTGGTGTCCATTTGCATGGAATGTATTTTCCCACCCCTTTACCTTAAGTTTATGTGAGTCCTTATGTGTTAGGTGAGT<br />TTCTTGAAAGCAGCAACTAGTAGGTTGGTGAATTATCTATTCTGCCATTCTGTATCTTTTAAATGGAGCATTTAGGCCACATTCAATGTTAGTATTGGGA<br />TGTAAGGTACTATTCCATTCATTGTGCTATTTGTTGCCTGTATACCTTTTTTTAATTGTATTTTTGTTTTATAGGTCCTGTGAGATTTATGCTTTTAGAG<br />GTTTTGTTTTATGTGTTTCCAGGATTTGTTTCAAGATTTAGCCCTCCTTTTGGCCGTTCTTGTAGTGCTGGCTTGATAGTGGCAAATTCTCTCAGTGTTA<br />GTTTATCTGAAGAAGACTGTATCTTTCTTTCATTTATGAAGCTTAATTTCACTGGATACAAAATTTTTGGCTGATAGTTGTTTTGTTTAAGGAGGCTTAA<br />CATAGGGCCCCAATCCCTTCTAGCTTGTAGAATTTCTGCTGAGAAATCTGTTGTTAATCTGATAGATTTTTATAGGTTACCTGGTGCTTTTGCCTCACAG<br />CTCTTAAGATTCTTTCCTTTGTCTTAACTTTTGTTTTTTTTCTTTGAGATGGAGTCTCGCTCTTTGCCCATACTGGAGTGCAGTGGCGTAATCTTGGCTC<br />AGTGCAACCTTTACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGACTAAAGGCATGTGCCACCACGCCCAGCTAATTTTTGT<br />ATTTTTAGTATAGATGGAGTTCTGCTATGTTGGCCAAGCTAGTCTTGAACTCCTGGCCTCAAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATT<br />ACAGATGTGAGCCACCGCGCCTTGCCTACTTTGTCTTAACTTTAGATAACCTGATGACAGTGTGCCTAGATGGTGATCTTTTTGTGATGAATCTCCCAGG<br />TGTTCTTTGTGCTTCTTATATTTGGATGTCTAGGTCTCTAGCAAGGCCAGTGAAGTTTCCCGGATTATTCCCCCAAATATGTTTTCCAAACTTTTAGATT<br />TCTCTTCTTTCCCAGGAATGCCAATTATTCTTAGGTTTGGTCATTTAACATATCTTCAAACTTCTTGGAGGCTTTGTTCATTTTTTCTTATTCTTTTTTC<br />TGTGTCTTTGTTAGACTGGGTTAATTCAAAAACCTTGTCTTTGAGCTCTGAAGTTCTTTCTTCTGCCATGTTCAGTTCTATTGCTGAGACTTTCCTGAGC<br />ATTTTGCATTTCTCTAAGTGCATTTATTTCCTGAAGTTTTAATTGTTTTTTATTTATGCTCTCAATTTCACTGAAGATTTCCCCCCTCATTTCTTATATC<br />TTTTTTTGGTTTCCTTAAATTGGACTTTACCTTTCTCTGGTGCCTCCTTGATTAGCTTATTAACTGACCTTCTGGATTCTTTTTCAGGTAAATCAAGGAT<br />TTTTTCTTGGTTTGGATTTATTGCTGGTAAGCTAGTGTGATTTTTGGGGGATATTAGCCTTGTTTTGTCGTATTACCTGAATTGTTTTTCTGGTTCTTTC<br />TCATTTGGGTAGGCTATGTTAGAAGGAAGGTCTAGGGTTCAAGGCTGCTGTTCAGATTCTTTTGTCCCATGGGGTGTTCTCTTGATGTAGTACTCTCTGT<br />GTTTTCCTAGGGATGTGGTTTCCTGAGGGCTAAGTTGTAGTGATTGTTATCTCTCTTCTGGATCTAGCCATCTGGTAGGTCTACCTGCTCCAGGCTGGTA<br />CTGGGGGAAGGAGGGGGTGTCTGCACAGAGTCCTGTGATGTGAACTGTCTGCAGGTCTCTCAGCCATGGATACCAGCTCCTGTTCCAGTGGAGGTGGCAA<br />GGGAGTGAAGTGGACTCTGCAAGGGTCCTTAGTTGTAATTTTGTTTATTGCACTATTTTTGTGCTAGTTGGCCTCCTGCCAGGAGGTTGTGCTTTTAAGA<br />GAGCATCGGCTGTAGTAGTATAGGGAGGATCAGGTGGTAGGTGGGGCCCTAGAACTCCCAAGAGTATATGCCCTTTGTCTTCAGCTACCAGGGTGGGCAG<br />GGAAGGACCATCAGGTGGAGACAGGGCTAGGCGTATCTGAGCTCAGACTCTCCTTGGGTGGGTCTTGCTGTGGCTGCTGTGGGGGATGGAGGTGTGGTTC<br />CCACATCAATGGAGCTGTGTTCCCAGGAAGACTATGGCTGCCTCTGCTGTGTCATGCAGTTCCTCTGGCAACCCTCCCCAAGGATCCTTCCTAGGCAAGG<br />CAGAAATGGCTTCCTTGTGGATCCAGAGAGCCCACAGGGCTTTTCCCACTGCTTCCTCTGCCCCAGTATTTCACTCGGCTCTCTAAACTGACTCAGCTCC<br />AGGAAATATTGAAAATGGACATGTGAAGCTCATTGTTATACATTTAAAAAATAACAGAGAACACCTACCTCTTATTGGAAAAGTTGGCCTCTCGTGGAAA<br />ACTGATATTTTTGATGGCTGTATAAAGAGTTGTTCCATGATGGACGTAACTCTTTTGGATGAACATGGGAAACCCTTTTGGTGTTTCAGTTCCCCGGTGT<br />GCCTGAGATCGCCTGCCACACCCTCTGACAGCTCTAGCTTCTTGGGACAGACATACAACGTGGACTACGTTGATGCGGAAGGAAGAGTGCACGTGGAGCT<br />GGTGTGGATCAGAGAGACCGAAGAATACCTTATTGTCAACCTGGTCCTTTATCTTAGTATCGCAAAAATCAACCATTGGTTTGGGACTGAATATTAGCAG<br />TAGGTGGCAAATTATTGTTGTTATTTAGTTGTTTATTTTTGACTGGCTTTGTTCTTGGTGTTGAAAATTAAAATAAAGCAAATCTGC

Expression



Full and truncated open reading frames discovered in ENST00000580806

In silico ORF/peptide predictions
>peptide 1 (87 aa)
MFSKLLDFSSFPGMPIILRFGHLTYLQTSWRLCSFFLILFSVSLLDWVNSKTLSLSSEVLSSAMFSSIAETFLSILHFSKCIYFLKF

>peptide 2 (86 aa)
MMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY

>peptide 3 (66 aa)
MEVWFPHQWSCVPRKTMAASAVSCSSSGNPPQGSFLGKAEMASLWIQRAHRAFPTASSAPVFHSAL

>peptide 4 (61 aa)
MLLEVLFYVFPGFVSRFSPPFGRSCSAGLIVANSLSVSLSEEDCIFLSFMKLNFTGYKIFG

>peptide 5 (60 aa)
MELCSQEDYGCLCCVMQFLWQPSPRILPRQGRNGFLVDPESPQGFSHCFLCPSISLGSLN

>peptide 6 (51 aa)
MSPFVFLNCCCCKVCFNDIRIATFACCWCPFAWNVFSHPFTLSLCESLCVR

>peptide 7 (51 aa)
MLVLGCKVLFHSLCYLLPVYLFLIVFLFYRSCEIYAFRGFVLCVSRICFKI

>peptide 8 (51 aa)
MRKEECTWSWCGSERPKNTLLSTWSFILVSQKSTIGLGLNISSRWQIIVVI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT059858 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8NCQ5|FBX15_HUMAN (Evalue: 9.0E-81)