Detailed information on ENST00000580806

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000580806 501 290 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000580806 519 252 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000580806 501 290 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000580806 518 264 noncoding Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000580806 519 252 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000580806 620 293 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000580806 612 293 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000580806 612 293 UTR3 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000580806 570 292 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000580806 610 299 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000580806 610 299 UTR3 Trans
TCONS_00109814 lincRNA novel protein coding ENST00000580806 507 289 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000580806 543 287 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000580806 602 296 UTR5 Trans

Sequence

>TCONS_00252827 (3186 nt)
ATGTCCATTTGTTCCAGGGTATAGTTTAAATCCATTGTTTCTTTGTTGACTTTCTGTCTTGATGACCTGTCTAGAGCTGTCAGTGGAGTATTGAAGTTTC
CCACTGTTATTGTGTTGCTGTGTATCTCATTTCTTAGGTCTAGTAGTAATTGTTTTATAAATTTGGGAGCTCCAGTGTTAGGTGCATATATTTTTAGGAC
TGTGATATTTTCCTGTTGGACAAAGCGTTTTATCATTACATAATGTCCCCCTTTGTCTTTTTAAACTGCTGTTGCTGTAAAGTTTGTTTTAATGATATAA
GAATAGCTACTTTTGCTTGCTGTTGGTGTCCATTTGCATGGAATGTATTTTCCCACCCCTTTACCTTAAGTTTATGTGAGTCCTTATGTGTTAGGTGAGT
TTCTTGAAAGCAGCAACTAGTAGGTTGGTGAATTATCTATTCTGCCATTCTGTATCTTTTAAATGGAGCATTTAGGCCACATTCAATGTTAGTATTGGGA
TGTAAGGTACTATTCCATTCATTGTGCTATTTGTTGCCTGTATACCTTTTTTTAATTGTATTTTTGTTTTATAGGTCCTGTGAGATTTATGCTTTTAGAG
GTTTTGTTTTATGTGTTTCCAGGATTTGTTTCAAGATTTAGCCCTCCTTTTGGCCGTTCTTGTAGTGCTGGCTTGATAGTGGCAAATTCTCTCAGTGTTA
GTTTATCTGAAGAAGACTGTATCTTTCTTTCATTTATGAAGCTTAATTTCACTGGATACAAAATTTTTGGCTGATAGTTGTTTTGTTTAAGGAGGCTTAA
CATAGGGCCCCAATCCCTTCTAGCTTGTAGAATTTCTGCTGAGAAATCTGTTGTTAATCTGATAGATTTTTATAGGTTACCTGGTGCTTTTGCCTCACAG
CTCTTAAGATTCTTTCCTTTGTCTTAACTTTTGTTTTTTTTCTTTGAGATGGAGTCTCGCTCTTTGCCCATACTGGAGTGCAGTGGCGTAATCTTGGCTC
AGTGCAACCTTTACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGACTAAAGGCATGTGCCACCACGCCCAGCTAATTTTTGT
ATTTTTAGTATAGATGGAGTTCTGCTATGTTGGCCAAGCTAGTCTTGAACTCCTGGCCTCAAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATT
ACAGATGTGAGCCACCGCGCCTTGCCTACTTTGTCTTAACTTTAGATAACCTGATGACAGTGTGCCTAGATGGTGATCTTTTTGTGATGAATCTCCCAGG
TGTTCTTTGTGCTTCTTATATTTGGATGTCTAGGTCTCTAGCAAGGCCAGTGAAGTTTCCCGGATTATTCCCCCAAATATGTTTTCCAAACTTTTAGATT
TCTCTTCTTTCCCAGGAATGCCAATTATTCTTAGGTTTGGTCATTTAACATATCTTCAAACTTCTTGGAGGCTTTGTTCATTTTTTCTTATTCTTTTTTC
TGTGTCTTTGTTAGACTGGGTTAATTCAAAAACCTTGTCTTTGAGCTCTGAAGTTCTTTCTTCTGCCATGTTCAGTTCTATTGCTGAGACTTTCCTGAGC
ATTTTGCATTTCTCTAAGTGCATTTATTTCCTGAAGTTTTAATTGTTTTTTATTTATGCTCTCAATTTCACTGAAGATTTCCCCCCTCATTTCTTATATC
TTTTTTTGGTTTCCTTAAATTGGACTTTACCTTTCTCTGGTGCCTCCTTGATTAGCTTATTAACTGACCTTCTGGATTCTTTTTCAGGTAAATCAAGGAT
TTTTTCTTGGTTTGGATTTATTGCTGGTAAGCTAGTGTGATTTTTGGGGGATATTAGCCTTGTTTTGTCGTATTACCTGAATTGTTTTTCTGGTTCTTTC
TCATTTGGGTAGGCTATGTTAGAAGGAAGGTCTAGGGTTCAAGGCTGCTGTTCAGATTCTTTTGTCCCATGGGGTGTTCTCTTGATGTAGTACTCTCTGT
GTTTTCCTAGGGATGTGGTTTCCTGAGGGCTAAGTTGTAGTGATTGTTATCTCTCTTCTGGATCTAGCCATCTGGTAGGTCTACCTGCTCCAGGCTGGTA
CTGGGGGAAGGAGGGGGTGTCTGCACAGAGTCCTGTGATGTGAACTGTCTGCAGGTCTCTCAGCCATGGATACCAGCTCCTGTTCCAGTGGAGGTGGCAA
GGGAGTGAAGTGGACTCTGCAAGGGTCCTTAGTTGTAATTTTGTTTATTGCACTATTTTTGTGCTAGTTGGCCTCCTGCCAGGAGGTTGTGCTTTTAAGA
GAGCATCGGCTGTAGTAGTATAGGGAGGATCAGGTGGTAGGTGGGGCCCTAGAACTCCCAAGAGTATATGCCCTTTGTCTTCAGCTACCAGGGTGGGCAG
GGAAGGACCATCAGGTGGAGACAGGGCTAGGCGTATCTGAGCTCAGACTCTCCTTGGGTGGGTCTTGCTGTGGCTGCTGTGGGGGATGGAGGTGTGGTTC
CCACATCAATGGAGCTGTGTTCCCAGGAAGACTATGGCTGCCTCTGCTGTGTCATGCAGTTCCTCTGGCAACCCTCCCCAAGGATCCTTCCTAGGCAAGG
CAGAAATGGCTTCCTTGTGGATCCAGAGAGCCCACAGGGCTTTTCCCACTGCTTCCTCTGCCCCAGTATTTCACTCGGCTCTCTAAACTGACTCAGCTCC
AGGAAATATTGAAAATGGACATGTGAAGCTCATTGTTATACATTTAAAAAATAACAGAGAACACCTACCTCTTATTGGAAAAGTTGGCCTCTCGTGGAAA
ACTGATATTTTTGATGGCTGTATAAAGAGTTGTTCCATGATGGACGTAACTCTTTTGGATGAACATGGGAAACCCTTTTGGTGTTTCAGTTCCCCGGTGT
GCCTGAGATCGCCTGCCACACCCTCTGACAGCTCTAGCTTCTTGGGACAGACATACAACGTGGACTACGTTGATGCGGAAGGAAGAGTGCACGTGGAGCT
GGTGTGGATCAGAGAGACCGAAGAATACCTTATTGTCAACCTGGTCCTTTATCTTAGTATCGCAAAAATCAACCATTGGTTTGGGACTGAATATTAGCAG
TAGGTGGCAAATTATTGTTGTTATTTAGTTGTTTATTTTTGACTGGCTTTGTTCTTGGTGTTGAAAATTAAAATAAAGCAAATCTGC

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.