Detailed information on ENST00000581020

lncRNA-RNA interactions

Number of interactions: 29

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000268097 hexosaminidase A (alpha polypeptide) protein coding ENST00000581020 962 578 UTR3 Trans
ENST00000394622 STEAP family member 2, metalloreductase protein coding ENST00000581020 661 283 UTR3 Trans
ENST00000467513 makorin ring finger protein 1 protein coding ENST00000581020 507 285 UTR5 Trans
ENST00000479069 bone morphogenetic protein receptor, type II (serine/threonine kinase) processed transcript ENST00000581020 626 285 noncoding Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000581020 641 290 CDS_UTR Trans
TCONS_00001594 lincRNA novel protein coding ENST00000581020 604 290 UTR5 Trans
TCONS_00005323 polypyrimidine tract binding protein 2 novel protein coding ENST00000581020 604 309 UTR3 Trans
TCONS_00005324 polypyrimidine tract binding protein 2 novel protein coding ENST00000581020 604 309 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000581020 613 290 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000581020 609 282 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000581020 674 288 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000581020 674 288 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000581020 656 293 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000581020 656 293 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000581020 656 293 UTR3 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000581020 656 293 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000581020 656 293 UTR3 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000581020 656 293 UTR3 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000581020 678 292 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000581020 618 293 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000581020 618 293 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000581020 618 293 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000581020 618 293 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000581020 618 293 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000581020 662 308 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000581020 687 307 UTR5 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000581020 632 288 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000581020 604 266 UTR3 Trans
TCONS_00249090 transmembrane protein 245 novel protein coding ENST00000581020 619 290 UTR3 Trans

Sequence

>TCONS_00249090 (1909 nt)
GATTGACTATGGTCTCTCCGGCTACCAGGTAGGGGCTGGGGAAGAAGGAACCTCCGAGATGAGGCGATAGGGTCTGGCCTTGAGCTGAGGCGACGCCCCG
GCTTGGGTGAGGGGAAGCGGTGTAGTGGTCGAGCTAAGGCCGCGGGCCCTGGGCGGCTTCCGGATCCCCGCGACGCCGAACTCTGAAGGAAGACTCAGCC
CAGGCGCTGGGACCAGAGCCCTGGCTCCGGCGAGTGCGTGGCGGGGAAACCCGCCTGTCGCCGAGGTGTCTTGAGTCCAGTTTCCGCTGCTGGGAATGGG
TGTCGCGCCGGGCGCTGTGTGTGAAAGGCCTCGCGCCCACAGGGCTCCTGGCTTCAACCTGTTTATTCCCACATTTCTGCGCGACGTAGGGGAGGCTCCG
CAGCGTCTGCGAGTGGCAGGACCGAGGGTTGAGCGCTGGGGGCCAGTGGCACCTTAGCCAGTGACGGCGAGTTAGGACTAGCAAAGGAAGTCCGGTTTTT
CAGAAGGCAGGAGGAGGGTGCTGACTCGAGCGTCCACGGGAATGGCTGGTTGAGATATCTTGCTCTTCCAATACTTACTCTGCGGCTTCCTGGCTGTGCG
GCTTTGGGCAAATGTTTTAAACTCTGAGTGTTTCTTCAGCTGTAACTTTGGGAGTAACAAGCCCACTCATAAGGTTGTTGTGAAGCGTAAATGAGACTGC
GCGTGCAAGGTGCTCAGCTGGTGTCTGGCACATAGTAGGTATTCAACAAATGGTAGCCACATAATGCTCTTTTTTTCAGTTTCCAAACCTTCCATGTAGT
GATTGGAGAATCGTGAAGTTACTTTTGAAGTAACGTTTGGGTTTCACACACTCATACATTTAGTAAGCAGAATTCTTGCTTACACTGTTGCCGATTGCAA
CGGTGTGTTTGCATAATGGAAGCTATGTTTGTGCCTTTGCCAAGGGTGTGGAATATGCCTTCCCTACCATGTACATGTCCCCTTTTCTCCATTCCTTAAT
AATAGTTGATATTTTTTGAGTGTTTGCTATGTTACAGGCACTGTACTAATCCCTTTACTGAATTATTCAATCCTGTAATAACCCTAATCATAGGAACTAT
AATTTTTATTTATGGAGGGAGAAATGGGCTTAGAGATGTTAAGAAGTTTATCCAAAGGCATAGAGCTATTAGCCAGGCAAGGTAGCACACGCCTGTAGTC
CCAGCTATTTGTTGGGGCTGAGGCAAGTGGATTGCTTGAACCTGGGAGACAGGCTGCAGTGAGCCGAGATCACGCCATTGCATTCAAGTCTGGGTGACAA
AGTGAGACCCTGTCTTGGCTGGGCGCAGTGGCTCACACATGTAATCCCAGCACTTTAGGAGGCTGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGA
CCAGCCTGGCCAACGTGGTGAAACCCCGTCTCTACTAAAAAATACAAAAATTGGCTGGGCGCGGTGGCTCACGCCTGTATTTCCAGCACTTTGGGAGGCC
AAGGCGGGCGGATCACGAGGTCAGGACCTCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATTCAAAAAAATTGGCTGGGCTTG
GTGGCGGGCGTCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTGCTCCGGATGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGCTGC
ACTCCAGCCTGGGCGACATAGTGAGACTCTGTCTCAAAACAAACAAACAAACAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCG
GGAGGCTTTGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATGCCGCCACTGCATTCCAGCCTGGGCGACAAGAGCGAGGAG
ACTCCGTCTT

Expression



Full and truncated open reading frames discovered in TCONS_00249090

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.