Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000268097 | hexosaminidase A (alpha polypeptide) | protein coding | ENST00000581020 | 962 | 578 | UTR3 | Trans | |
ENST00000394622 | STEAP family member 2, metalloreductase | protein coding | ENST00000581020 | 661 | 283 | UTR3 | Trans | |
ENST00000467513 | makorin ring finger protein 1 | protein coding | ENST00000581020 | 507 | 285 | UTR5 | Trans | |
ENST00000479069 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | processed transcript | ENST00000581020 | 626 | 285 | noncoding | Trans | |
ENST00000553936 | gephyrin | nonsense mediated decay | ENST00000581020 | 641 | 290 | CDS_UTR | Trans | |
TCONS_00001594 | lincRNA | novel protein coding | ENST00000581020 | 604 | 290 | UTR5 | Trans | |
TCONS_00005323 | polypyrimidine tract binding protein 2 | novel protein coding | ENST00000581020 | 604 | 309 | UTR3 | Trans | |
TCONS_00005324 | polypyrimidine tract binding protein 2 | novel protein coding | ENST00000581020 | 604 | 309 | UTR3 | Trans | |
TCONS_00030591 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000581020 | 613 | 290 | UTR3 | Trans | |
TCONS_00090929 | nucleoporin 93kDa | novel protein coding | ENST00000581020 | 609 | 282 | UTR3 | Trans | |
TCONS_00103261 | Rap guanine nucleotide exchange factor (GEF)-like 1 | novel protein coding | ENST00000581020 | 674 | 288 | UTR5 | Trans | |
TCONS_00103262 | Rap guanine nucleotide exchange factor (GEF)-like 1 | novel protein coding | ENST00000581020 | 674 | 288 | UTR5 | Trans | |
TCONS_00108999 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000581020 | 656 | 293 | UTR5 | Trans | |
TCONS_00109000 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000581020 | 656 | 293 | UTR5 | Trans | |
TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000581020 | 656 | 293 | UTR3 | Trans | |
TCONS_00109012 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000581020 | 656 | 293 | UTR3 | Trans | |
TCONS_00109013 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000581020 | 656 | 293 | UTR3 | Trans | |
TCONS_00109014 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000581020 | 656 | 293 | UTR3 | Trans | |
TCONS_00140732 | NCK adaptor protein 2 | novel protein coding | ENST00000581020 | 678 | 292 | UTR5 | Trans | |
TCONS_00141667 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000581020 | 618 | 293 | UTR3 | Trans | |
TCONS_00141670 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000581020 | 618 | 293 | UTR3 | Trans | |
TCONS_00141673 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000581020 | 618 | 293 | UTR3 | Trans | |
TCONS_00141679 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000581020 | 618 | 293 | UTR3 | Trans | |
TCONS_00141681 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000581020 | 618 | 293 | UTR3 | Trans | |
TCONS_00165341 | TTC28 antisense RNA 1 | novel protein coding | ENST00000581020 | 662 | 308 | UTR5 | Trans | |
TCONS_00235393 | processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) | novel protein coding | ENST00000581020 | 687 | 307 | UTR5 | Trans | |
TCONS_00235708 | oxidation resistance 1 | novel protein coding | ENST00000581020 | 632 | 288 | UTR3 | Trans | |
TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000581020 | 604 | 266 | UTR3 | Trans | |
TCONS_00249090 | transmembrane protein 245 | novel protein coding | ENST00000581020 | 619 | 290 | UTR3 | Trans |
>TCONS_00249090 (1909 nt)
GATTGACTATGGTCTCTCCGGCTACCAGGTAGGGGCTGGGGAAGAAGGAACCTCCGAGATGAGGCGATAGGGTCTGGCCTTGAGCTGAGGCGACGCCCCG
GCTTGGGTGAGGGGAAGCGGTGTAGTGGTCGAGCTAAGGCCGCGGGCCCTGGGCGGCTTCCGGATCCCCGCGACGCCGAACTCTGAAGGAAGACTCAGCC
CAGGCGCTGGGACCAGAGCCCTGGCTCCGGCGAGTGCGTGGCGGGGAAACCCGCCTGTCGCCGAGGTGTCTTGAGTCCAGTTTCCGCTGCTGGGAATGGG
TGTCGCGCCGGGCGCTGTGTGTGAAAGGCCTCGCGCCCACAGGGCTCCTGGCTTCAACCTGTTTATTCCCACATTTCTGCGCGACGTAGGGGAGGCTCCG
CAGCGTCTGCGAGTGGCAGGACCGAGGGTTGAGCGCTGGGGGCCAGTGGCACCTTAGCCAGTGACGGCGAGTTAGGACTAGCAAAGGAAGTCCGGTTTTT
CAGAAGGCAGGAGGAGGGTGCTGACTCGAGCGTCCACGGGAATGGCTGGTTGAGATATCTTGCTCTTCCAATACTTACTCTGCGGCTTCCTGGCTGTGCG
GCTTTGGGCAAATGTTTTAAACTCTGAGTGTTTCTTCAGCTGTAACTTTGGGAGTAACAAGCCCACTCATAAGGTTGTTGTGAAGCGTAAATGAGACTGC
GCGTGCAAGGTGCTCAGCTGGTGTCTGGCACATAGTAGGTATTCAACAAATGGTAGCCACATAATGCTCTTTTTTTCAGTTTCCAAACCTTCCATGTAGT
GATTGGAGAATCGTGAAGTTACTTTTGAAGTAACGTTTGGGTTTCACACACTCATACATTTAGTAAGCAGAATTCTTGCTTACACTGTTGCCGATTGCAA
CGGTGTGTTTGCATAATGGAAGCTATGTTTGTGCCTTTGCCAAGGGTGTGGAATATGCCTTCCCTACCATGTACATGTCCCCTTTTCTCCATTCCTTAAT
AATAGTTGATATTTTTTGAGTGTTTGCTATGTTACAGGCACTGTACTAATCCCTTTACTGAATTATTCAATCCTGTAATAACCCTAATCATAGGAACTAT
AATTTTTATTTATGGAGGGAGAAATGGGCTTAGAGATGTTAAGAAGTTTATCCAAAGGCATAGAGCTATTAGCCAGGCAAGGTAGCACACGCCTGTAGTC
CCAGCTATTTGTTGGGGCTGAGGCAAGTGGATTGCTTGAACCTGGGAGACAGGCTGCAGTGAGCCGAGATCACGCCATTGCATTCAAGTCTGGGTGACAA
AGTGAGACCCTGTCTTGGCTGGGCGCAGTGGCTCACACATGTAATCCCAGCACTTTAGGAGGCTGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGA
CCAGCCTGGCCAACGTGGTGAAACCCCGTCTCTACTAAAAAATACAAAAATTGGCTGGGCGCGGTGGCTCACGCCTGTATTTCCAGCACTTTGGGAGGCC
AAGGCGGGCGGATCACGAGGTCAGGACCTCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATTCAAAAAAATTGGCTGGGCTTG
GTGGCGGGCGTCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTGCTCCGGATGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGCTGC
ACTCCAGCCTGGGCGACATAGTGAGACTCTGTCTCAAAACAAACAAACAAACAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCG
GGAGGCTTTGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATGCCGCCACTGCATTCCAGCCTGGGCGACAAGAGCGAGGAG
ACTCCGTCTT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.