Detailed information on ENST00000581220

lncRNA-RNA interactions

Number of interactions: 51

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000581220 669 296 UTR3 Trans
ENST00000378204 exostosin glycosyltransferase 1 protein coding ENST00000581220 527 303 UTR3 Trans
ENST00000413800 galactose-3-O-sulfotransferase 4 protein coding ENST00000581220 529 298 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000581220 626 295 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000581220 597 304 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000581220 619 297 CDS Trans
ENST00000498535 makorin ring finger protein 1 nonsense mediated decay ENST00000581220 565 272 CDS Trans
ENST00000517408 antisense antisense ENST00000581220 503 297 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000581220 568 282 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000581220 631 303 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000581220 510 298 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000581220 578 297 UTR3 Trans
TCONS_00010354 TNF receptor-associated factor 5 novel protein coding ENST00000581220 543 276 UTR3 Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding ENST00000581220 608 307 UTR3 Trans
TCONS_00023291 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000581220 503 260 UTR3 Trans
TCONS_00023292 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000581220 503 260 UTR3 Trans
TCONS_00023296 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000581220 503 260 UTR3 Trans
TCONS_00023298 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000581220 503 260 UTR3 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000581220 522 298 UTR3 Trans
TCONS_00025775 zinc finger, MIZ-type containing 1 novel protein coding ENST00000581220 522 298 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000581220 604 292 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000581220 604 292 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000581220 670 283 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000581220 627 305 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000581220 627 305 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000581220 522 307 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000581220 601 304 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000581220 601 304 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000581220 601 304 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000581220 607 305 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000581220 607 305 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000581220 631 303 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000581220 511 300 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000581220 617 298 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000581220 604 304 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000581220 632 302 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding ENST00000581220 603 291 UTR5 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000581220 585 296 UTR3 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000581220 603 276 UTR5 Trans
TCONS_00142174 LY6/PLAUR domain containing 6B novel protein coding ENST00000581220 628 300 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000581220 643 309 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000581220 643 309 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000581220 643 309 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000581220 669 296 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000581220 515 298 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000581220 628 300 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000581220 632 294 UTR5 Trans
TCONS_00234826 zinc finger, C2HC-type containing 1A novel protein coding ENST00000581220 600 298 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000581220 612 303 CDS_UTR Trans
TCONS_00246881 cyclin-dependent kinase inhibitor 2A novel protein coding ENST00000581220 604 301 UTR5 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000581220 587 288 UTR3 Trans

Sequence

>TCONS_00251973 (2383 nt)
GGTTGAGAAATGAGGCAAGGAATGTAGTGGCTCAAGAGATCCTCCCTCCTTGGCCTCCCAAAGTGTTGGGATAACAAGGATAACAGGAGTGAGCCGCCAT
GCCTGGCTGAGCCAGTAATTTTTACTCTCTTAAAAACTAGGTTATTCCTAATGATTCTGCCTTTGAGTTGAAATTACTGTGTGTGTGTGTGTGTGCGTGT
GCACACGTGCATGCATCCAAGTCTTTTTATAAATGTGCTGCTCCCTGTTTTTAGTTTATAAGAGAACATTGCTAATACTTCTTACTGACTTTCTTGTATT
TCCTTACTAGTTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATAATGAA
GCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAAATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAGCTGCTTCATTTTTGAAAGATGATGGAG
ACCCACCACTACTATATGATGAATAGCACTAATACCCACTGCTTCAGTGTTAACACAGCAGTGATTGTCAGCTGCCAATAGCAAATGAAGTTATGGGTGA
CTTGAAATACCAAAACCTGAGGAGTGGGCAATGGTGCTTCTGTGCTTTTCCCCCTTGTAACCCATGTGCCAGATGTGTGGAATTTTTAGCTCAGCATTGA
GAGAATAAAATGTCACTACCTCTCATCTTATGAACAGGATAATATAATTCTTTAACAGCTATAGGTTATCTGGCTGAAGTAGACCTAATTTTATGTGACT
TGTGGTGTAAAATGTCTTGATGATAATTTTTAAAACTTGGGTAACACTTCCAAATATGGGAGGAAAGGACAGATGTGTTTACAAGGGAGGATTTTACAAC
ATACTTGCTTTATTCACCTCCCTGTTTTGTGTTGCGTCTTTCCTTGAATATTTTATTGGCCCAGAGTTAGCCTTTCTCAATTATGTTTCCAGACTGTGGC
CGTGATTCTAAAGGAAAATGTGTGCTCTTTAGTGGGTAGAACAAATGGAAATTTGGTTTCAGAATGGCTGACAGAAATCGACATAAGTCATGTAATTTTT
GTTGATATATCATGAAAATGAACAGAATTCTTTTTCCATACTTATATCTAAGAAAAGGCATCATAGGTTTCTGAAAGAGATAACTATATAACAGCTTTTT
AACTATCCAGTCAACTTTCAGCTTTTCTACATTTAGGTAAAATGGTTAGGATATAACTCATGGTGTGGCTAATCTACATTTATCAATAAAATGTAAATTA
TCTGAAAGGACAGAATATAAGATTTAACCATGTTTGACGTATTTTAATTTAGTTAATGAAGCAAAATTCAGTTTATATTTCACTAGAACTGTGTACTTGA
TTGATTTTCAGAGAAATATCACAAATTAGAAATATTAAATCTAAGGATGAAAGGTATATATAAAACAATTTGGGGGCCAGGCACGATGGCTCAAACCTGT
AATCCCAGCACTTTGGGAGACCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGCAACATGGCGAAACCCTGTCTCTACTAAAAAT
ACAAAAATTAGCCGGGTGTGGTGGCACTTCTCTGTAATCTCAGCTTCTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGT
GAGCTGAGATCATGCCACTGCACTCCGGCCTAGGTGACAGAGGGAAACTCCATCTCCAGGAAAAAAAAAAAAAAACCCAATTTGGATACCAAATTAATCA
ACTAATTTGAGCTATCTGGCCTTACTCTTAGTAGTTTTTAGTACGTGCTGGACACCACTTTTAAAAAGCAATCACTGTGCTAGAAAAGTATATTGGCTTT
GTTAGGATTAAAGTTCATTAACTTCAATGTAATCATGCCTCCTATTACTGAAGTCAGATTGGAACCACTAAAGATCCAAACTTTCTGTCTGGTAATAGAA
AGTAAAAATCTAGACATCATTTACATTTGAGAAAGCTGTTTTTAACATTATTTTAAAATGCCAAATATGTTCTTTCTAGAAAAATATTTATTTTTGTTTT
TGTTGGATAGCTTTTAATTACATTTCAGAGAGGTGTAATTTTGGGTAGATGCTCATTACATTTTTGAAAGGTTTATGATTCCAAAATAAAGATTTATATG
ACTGGTGATACTGGCTTTACAGAAATTTCAGAGAACTAATTTTTAAAATCTTTAGCATTTAAAACTTTTTTTGTTTTGTTTTCTGACATATTCTGACAAA
GAGCAGCAAACCACTGCTGTGTGGCATTCTTGGAGTGTGCTGTGAATGTGCTTTTTAAGAAATTAAAAAGAGATCATTTTAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.