Detailed information on ENST00000581932

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000620139 melanoregulin protein coding ENST00000581932 564 272 UTR3 Trans

Sequence

>ENST00000581932 (1163 nt)
GTGTCATGTGATTCTCTGAGGGAGCAGCTGCGTGAGTGGAGATGCTTTCAGTGGTGGAGAATGGACTGGACCCCCAGGCTGCCATCCCGGTCATCAAGAA<br />GAAGCTGGTGGGATCCGTGAAGGCCTTGCAGAAGCAGTACGTGTCCCTGGACACGGTGGTCACTAGTGAAGACGGAGATGCCAACACCATGTGCAGCGCC<br />CTGGAGGCCGTATTTATCCATGGCCTGCACGCCAAGCACATCCGAGCTGAGGCCGGAGGAAAAAGGAAGAAAAGTGCCCACCAGAAGCCTCTGCCCCAGC<br />CTGTCTTCTGGCCCCTCCTGAAAGCTGTCACCCACAAGTGAGATTTAGCTGGAGAGGTTTTGCTTTGCGGAGGAGCAGCAGACTATGGGACACTTGGCTT<br />TTCCTCCCCAGCTGTTCAGGAAGCCAACAGAGGTGCCCTGTGTTCTAGCATAGAGAGAGGGTGAGGTAGGGGTTGAAAGTGTCTTCTAGAAAGGCTTATC<br />TCTAGACCAAGCTTCCCAGCCAGTGTGCCAGCAGATCTTGAGACCCTCAGCACTCAGGCAAGAGCCTGTGGCTGCTTTGAGACTGGTCACAAAAAGCAGG<br />TGAGACTGGCCACCTTTAGCAGGAACAGCCTTTTTTGCCACACTGGGGCAGAGTTACATAGTTACAACAGAGGTTGTGTGGCCTGCAAAGCCTGAAGAAT<br />ATACTATCTGGCCCTTTACAGAAGGGCTGACCCTGCCTTGGATTTGCTGACCCTGCCTTAGATTATTCAAACATCCGAATTGTAAATCTTTTTTTTTTTT<br />TTTGGGATGGAGTTTCGCTCTGTCACTCAGGCTGGAGTGCAATGGCGCGATCTCGGTTCACTGGCACCTCTGCTTCCCAGGTTCAAGCAATTCTCCTGCC<br />TCAGCCTCCTGAGTAACTGGGACAACAGGCGCGCACCATCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGTTTTGCTATGTTGGTCAGGCTGC<br />TCTCAAACTCCTGACCTTGTGATCTGCCTACCTCCGCCTCCCAAAGTGCTGGGATTATATAAAGAGTGGAATCAGGAAAAGCATATGAATATTCACCCTG<br />AGACACTTATCTCTTTGGCCCCTAACTGTCTGGGCTTTTGAGCAAGTAGCTGGCACTGTGCCT

Expression



Full and truncated open reading frames discovered in ENST00000581932

In silico ORF/peptide predictions
>peptide 1 (99 aa)
MLSVVENGLDPQAAIPVIKKKLVGSVKALQKQYVSLDTVVTSEDGDANTMCSALEAVFIHGLHAKHIRAEAGGKRKKSAHQKPLPQPVFWPLLKAVTHK

>peptide 2 (71 aa)
MEFRSVTQAGVQWRDLGSLAPLLPRFKQFSCLSLLSNWDNRRAPSRPANFCIFSREGFCYVGQAALKLLTL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT054124 (Evalue: 1.0E-71)

Best hit to Swiss-Prot:
sp|Q9Y4G2|PKHM1_HUMAN (Evalue: 1.0E-54)