Detailed information on ENST00000581946

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000581946 518 253 noncoding Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000581946 536 260 UTR5 Trans

Sequence

>TCONS_00135884 (545 nt)
ATCATAAATAATTTGAGAAGACAGATAATAAGGAAACTAGTTATGAAACAATTAAAATAATCCAACAGAAAAGAATGAACATGGTGACAGTGAGACCGGA
AAATTATGACAGCAAAACCACTCACTTATGAATTGATAGCAGCATCAGAATATGCTTTCTTACTCATATGGTGTAAAAACTTTCACCACCCCCCCAACCA
TCTCTCCCACCTTGAACAAAATGATAATTATTTCTAACTTATTCTGACAATTTGAAAAAGAGGATCTACTAGGCCACGCATGGTGGCTCACGCCTGCAAT
CACAGCACTTTGGGAGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGAACAGGCTGGCCACCATGGTGAAAACCTGTCTCTACTAAAAGTACA
AAATTAGCCAGGCATGGTGGCACACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCGGGAGAATTGCTTGAAACAGGGAGGCAGAGATTGCAATAAGC
CGAGATCACGCCACTGCACTCCAGCCTGGGTGAAGAGTAAAACTCC

Expression



Full and truncated open reading frames discovered in TCONS_00135884

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.