Detailed information on ENST00000582596

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000582596 514 283 UTR5 Trans
ENST00000338758 parvin, beta protein coding ENST00000582596 675 307 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000582596 562 299 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcript... nonsense mediated decay ENST00000582596 613 293 CDS_UTR Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000582596 509 287 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000582596 540 300 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000582596 629 270 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000582596 629 270 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000582596 629 270 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000582596 613 293 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000582596 613 293 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000582596 612 293 UTR3 Trans

Sequence

>ENST00000582596 (1119 nt)
ATCTTTAGTATTGTGAGCCCTTAAAAGGGACGGAAATTGTGCATTCGGGGAGCTCGGATTTTAAGGCAGTAGCCTGCTGATGCTCCCAGCTGAATAAAGC<br />CCTTCCTTCTACAATTTGGTGTCTGAGGGGTTTTGTCTGCGGCTCGTCCTGCTACATTTCTTGGTTCCCTGACCAGGAAACGAGGTAACTGATGGACAGC<br />CGAGGCAGCCCCTTAGGCGGCTTAGGCCTCCCCTGTGGAGCATCCCTGAGGCGGACTCCGGCCAGCCCGAGTGACGCGATCCAAAGAGCACTCCCGGGTA<br />GGAAATTGCCCCGGTGGAATGCCTCACCAGAGCAGCGTGTAGCAGTTCCCTGTGGAGGATTAACACAGTGGCTGAACACCGGGAAGGAACTGGCACTTGG<br />AGTCCGGACATCTGAAACTTGAGAACATCACCACCCTGAAGCCAGAGACTAACACTGCAGGACTCAGCAGGACTATTTAAGAAACAACTGAGGCATCAGA<br />CCAACTTTCCCCACAAGTCCTCGGATCTTTCCTGCCATGCTGATGCCATATATTCCAACGTGATCAACCTGGCTCCCCAGAAGGAGGACGACTTTGCTGT<br />CTACACCAACATGCCCCCTTTTCATCACCCCAGGAGGACATTGCCAGACCAAGTGGAATATGTCTCCATTGTATTCCACTGATGGGAAGCTAATGAGATG<br />CTCAGAGTGGGGGTCAGACCTGGCCCCAGCTGAATCTTGGCATACCCTTTGCTTTAGATTTATGTGTGTGTTTAAAAAAAAAAAAATACATAGGCCAGGC<br />ACGGTGGCTCACACCTGTATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACCAGGTCAAGAGATCAAGACCATCCTGGCCAACATGGTGAAACCCC<br />GTCTCTACTAAAGATACAAAAATTAGCCAGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTTGGAAGGCTGAGGCAGGAGAATCACTTGAACCCAGGG<br />GGCGGAAGTTGCAGTGAGCCAAGATCACACCGCTGCACTCCAGCCTGGCAACAGAGTGAGACTCCATCTCTAAAAAAAGTAAATAAATAAAAATAAAACG<br />TAAAACATATTCTGATGGA

Expression



Full and truncated open reading frames discovered in ENST00000582596

In silico ORF/peptide predictions
>peptide 1 (83 aa)
MSPLYSTDGKLMRCSEWGSDLAPAESWHTLCFRFMCVFKKKKIHRPGTVAHTCIPALWEAEAGRSPGQEIKTILANMVKPRLY

>peptide 2 (76 aa)
MDSRGSPLGGLGLPCGASLRRTPASPSDAIQRALPGRKLPRWNASPEQRVAVPCGGLTQWLNTGKELALGVRTSET


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT009047 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 4.0E-23)