| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000324537 | SH3-domain GRB2-like 3 | protein coding | ENST00000582596 | 514 | 283 | UTR5 | Trans | |
| ENST00000338758 | parvin, beta | protein coding | ENST00000582596 | 675 | 307 | UTR3 | Trans | |
| ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000582596 | 562 | 299 | CDS | Trans | |
| ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | ENST00000582596 | 613 | 293 | CDS_UTR | Trans | |
| ENST00000588483 | tropomyosin 4 | protein coding | ENST00000582596 | 509 | 287 | UTR5 | Trans | |
| TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | ENST00000582596 | 540 | 300 | UTR3 | Trans | |
| TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000582596 | 629 | 270 | UTR3 | Trans | |
| TCONS_00147113 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000582596 | 629 | 270 | UTR3 | Trans | |
| TCONS_00147115 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000582596 | 629 | 270 | UTR3 | Trans | |
| TCONS_00194682 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000582596 | 613 | 293 | UTR3 | Trans | |
| TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000582596 | 613 | 293 | UTR3 | Trans | |
| TCONS_00239255 | tumor protein D52 | novel protein coding | ENST00000582596 | 612 | 293 | UTR3 | Trans |
>TCONS_00239255 (1118 nt)
ATCTTTAGTATTGTGAGCCCTTAAAAGGGACGGAAATTGTGCATTCGGGGAGCTCGGATTTTAAGGCAGTAGCCTGCTGATGCTCCCAGCTGAATAAAGC
CCTTCCTTCTACAATTTGGTGTCTGAGGGGTTTTGTCTGCGGCTCGTCCTGCTACATTTCTTGGTTCCCTGACCAGGAAACGAGGTAACTGATGGACAGC
CGAGGCAGCCCCTTAGGCGGCTTAGGCCTCCCCTGTGGAGCATCCCTGAGGCGGACTCCGGCCAGCCCGAGTGACGCGATCCAAAGAGCACTCCCGGGTA
GGAAATTGCCCCGGTGGAATGCCTCACCAGAGCAGCGTGTAGCAGTTCCCTGTGGAGGATTAACACAGTGGCTGAACACCGGGAAGGAACTGGCACTTGG
AGTCCGGACATCTGAAACTTGAGAACATCACCACCCTGAAGCCAGAGACTAACACTGCAGGACTCAGCAGGACTATTTAAGAAACAACTGAGGCATCAGA
CCAACTTTCCCCACAAGTCCTCGGATCTTTCCTGCCATGCTGATGCCATATATTCCAACGTGATCAACCTGGCTCCCCAGAAGGAGGACGACTTTGCTGT
CTACACCAACATGCCCCCTTTTCATCACCCCAGGAGGACATTGCCAGACCAAGTGGAATATGTCTCCATTGTATTCCACTGATGGGAAGCTAATGAGATG
CTCAGAGTGGGGGTCAGACCTGGCCCCAGCTGAATCTTGGCATACCCTTTGCTTTAGATTTATGTGTGTGTTTAAAAAAAAAAAAATACATAGGCCAGGC
ACGGTGGCTCACACCTGTATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACCAGGTCAAGAGATCAAGACCATCCTGGCCAACATGGTGAAACCCC
GTCTCTACTAAAGATACAAAAATTAGCCAGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTTGGAAGGCTGAGGCAGGAGAATCACTTGAACCCAGGG
GGCGGAAGTTGCAGTGAGCCAAGATCACACCGCTGCACTCCAGCCTGGCAACAGAGTGAGACTCCATCTCTAAAAAAAGTAAATAAATAAAAATAAAACG
TAAAACATATTCTGATGGA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.