Detailed information on ENST00000583314

lncRNA-RNA interactions

Number of interactions: 32

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000583314 601 285 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000583314 604 290 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000583314 522 287 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000583314 632 286 UTR3 Trans
ENST00000450928 antisense antisense ENST00000583314 529 292 noncoding Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000583314 536 289 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000583314 561 293 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000583314 579 289 CDS_UTR Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000583314 613 266 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000583314 572 289 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000583314 658 289 UTR3 Trans
TCONS_00032151 long intergenic non-protein coding RNA 959 novel protein coding ENST00000583314 509 269 UTR5 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000583314 522 287 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000583314 604 290 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000583314 604 290 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000583314 604 290 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000583314 613 266 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000583314 607 276 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000583314 607 276 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583314 500 289 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000583314 605 292 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000583314 609 285 noncoding Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000583314 645 289 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000583314 645 289 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000583314 645 289 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000583314 606 290 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000583314 606 290 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000583314 601 285 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000583314 535 289 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000583314 535 289 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000583314 612 290 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000583314 613 289 CDS_UTR Trans

Sequence

>TCONS_00240688 (1713 nt)
TTGGGTACAGTGCAAGATGCTTGGGTGATGGGTGCACTGAAATCACCACTAAAGAACTAGTTTCCCAAAAACTATTGAAAAAAAAAGTGGCAGCTAAATT
AGGCCCTAAAGAATGGTTAGGATTTTCACATGTAAAGATTACAGGCCGGGCATGGTGTCTCACGCCTGCCATTTTAGCACTTTGGGAAGCCAAGGCAGGA
GGACTGCTTGAGCCCAGAAGTTCGAGACCAGCTTGGGCAACATGGCAAAACTTCGTCTCTACAAAAAATACAAAGAATTAGTCAGGCGTGGTAGTGTGCA
CCTGTAGTTCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACCTGAGCCCCAGGAGGTCAAGGCTGCAGTGGGCTGAAATCACGCCACTATACTCTAGC
CTGAGCAACAGAGGGAGACCCTATCTCGAAAAACAACAACAACAACAAACATTACAGATAGGAAGGCATTCCAGATGGAGGTAACTGTACAGAAGTATGG
AGGTTGAAAGAAAGCACTATGTCTAAAGCAGGGTTTCTCAATCTCAGCACCGCTACCATTTTGGGCCTGATAATTCTGTTGTGGGGGGAAGGGGGGGTTT
GCCTGCACATTTCTGTACACTGTAGGAGGTTCAGCAGTATACCTGGCCTCTACCCACTAGATGTCAAGCAGTAGCCCCCAGGTTGTAACCACCAAAAAAG
TCTGTAGACATTGTCAGATGTCCCCTGGTGAGTGGCGGTACAGGGCAATATCTCCTCTGACTGAGAACCTCTGGCCTTTCTAGGAAAGAAATTAAAATAT
ATTTGTTGTCATGTCAAAAGAAGTGTAAAGAGGCTACTACTTGCTCTATGTATAATGCAAAGGATACCTAGTCAAGTTCTTTCTTGGAGGAAATAACTAT
CAGAAAGCCACAGCAGTACATGATTTTATGAATGAAATCAATGTCTCTATGACTCTTCTGAGGGAAGCTAAAACAATTCTTATTCTGGAAAACCCTGTAT
AGTCAAGAGAGTTAAGCAAAACACACAACACATTACAAGCTTTTATGTAAAAGTAATTTTACCTTGTCTTGCTGTGTATTCATTGTCTTCAATTAACCTT
GCTAAACCAAAGTCTGCTATTTTGCACACAAGATTTTCTCCTACAAGAATATTAGCAGCCCGAAGATCTCGGTGAATATAGTTCATTCTTTCAATATATG
CCATACCATCAGCAATCTTGGAAAGAGAAAAACAAAAAACACAAGACATACGATACAAAGGGAAGCAGAGAGAAGACAATTATGGTTAATATCAAATTGT
GTCACTGAAAATCATATTATTTTAGAAGGAGATGATGGTAACAGGGTATAGTCTAGAAGATAACAGGAAAACCAGAAAACATAATAAAAATGCAGGCTAA
ATTCAGATTTCAAAAATCTAACACTGGCTGGGTGCGGTGGCCCACACCTATAATCCCATTAATTTGGGAGGCCGAGGCAGGTGGATCATTTGAGGTCATG
AGTTCGAGATCAGCCTGGCCAACACGGTGAAACCCTGTCTCTATTAAAAATACAAACATTAGCTGGGTGTGGTGGCACATACCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAAAATCACTTGAACCCAGGAGGCAAAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGAAACAGAGCGAGACT
CAGCCTCAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00240688

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.