Detailed information on ENST00000583416

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000583416 508 281 UTR5 Trans
ENST00000550527 apoptotic peptidase activating factor 1 protein coding ENST00000583416 616 277 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000583416 511 295 UTR5 Trans
TCONS_00053421 apoptotic peptidase activating factor 1 novel protein coding ENST00000583416 616 277 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583416 593 280 UTR5 Trans
TCONS_00182243 homogentisate 1,2-dioxygenase novel protein coding ENST00000583416 551 304 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000583416 531 289 UTR3 Trans

Sequence

>TCONS_00203663 (2473 nt)
AAAATGAACGTCTGAGATTTAATCAGAAAACCATTGGTCAATAACTGTTTTAAAATCACTGAAATACAAATCATCTGACATATGTTGTTTACCTTAAGTA
TATACTCATTTTGTAAATTTTTTTACCCCCTGACACACACACACACACACACACACACACACAAACACACACACAAGCACTATTCCCAGCTTTCTCTTCA
TGGAGTAATTTAATTTATTCCATTTTAAAAATCTTAGACTCAGAAAATAATAAATAATTAAGGAATATTATAGAACCGATTACATGATTTCAGTAAGCTA
AAAATGTTCACTCTGTATTTCTCACTATATCAATGAGATTCTTTATTATACAAGTGTAACAGCTCTTAAGAGCAATTAGTTAAGTAAAATTTTGTCAGAA
GATATGAGGATTACTCTCTTATTTAAAAAAAGTAACTTGCCAACAAACAGGCATGATTGAATTAGAGAAGCTTCAGTTTTTTGTGACCCTGCTCCTGAAG
TGAAACTTGGATCCTAAACACCAAATGGTGGGTTCACCTGCCATGATACATGACATTTGTTTTATCAAACAGCATAAACTCCGTTAAAGATGTTCCTTGA
AAGGTCTAACTTCATGTATACCCTGCCATCAGAGCTGATCTACCATAGATAGACTAACAAATACCAACCGAATACAATCTAATGCACAAAGGACAGAAAA
ATAAATTACATTTTCCCCCAAGTTTACAAAATTGATTGCTCATTAAGATGTTTATGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTAGGGAG
GCCAAGGCAGGCAGATCACGAGGTCAAGAGATCAAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAATTAGCTGGGCATGGTA
GCGCACCTGTTGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTCGAGGTTGCAGTGTGCTGAGTTTGTGCCACTGCACTC
CAGCCTGGTGACAGGGCAAGACTCTGTCTAAAAAATAATAATAAAATAAGAAGATGTTTATATGTACATCTTAATTTAATTCACTATCTCAGATTATTTT
TAAATTTGCCTTTAAGCTTAATGGAAAATTCCCCTGAACTGTGGTATAATTTGAGTTCAAAATGTATTAATCATATCCAAATCTTCATCTTGAATTAGGA
AATGTTCATTTATTATAAGCCATTTCTAAAATTGCTTTTAAACCTATACAATATGAATATGATTGGGTTACTAAGGTAAGCCTGGACATGATAAAGTAGG
TTGTAAAAATTTAGAATTTTTAATCCCAGTAATCAAATCAGCATTCTAGGAAATCAAGTATGATATCTATTGAAAGGGTGATGACACCTGAATTATGGTA
TTATGCTTTTATAGCCAGCTTCTGAAACTGTAATATCACTGAGTATCACAGACAAGACACAATAATAAGGTTACCCGCAGAGAAAAGGTAAAATGCCTTG
TAAATTTAACTTTCTAGATTTTCAAGTTTCAAGTTTTTGTACTAAATACTAAAGTTGTACTAAAGTTGAAGCCTTATGTTCAGAAATGTTCCTGTATCTA
AAAAATAAGCTTATGGCATTTCCCCATAAAACACATTTCTAAGTCCCAAGATGGAGTAATTAGAGAGATGTTTCTGCATGGAATTCTATAAATTGTCACA
CCTGTTTAGTTGAACAATGAATGAAAATATGCAGACTTGAACAGAATTCAAGAAATTATTAAAAGACTTACACTTTACCAGCAGAAATTACTTAATATAG
GAAAAACATCAGTCATTTTTCAGGGAGTCATCAAGGGATTTTTAAATCACTAAAAATGACAAATAAGAAGCGGAAAATTATCACAATTATATAAGCAGTA
TTACTGCGATGTACAGAACATCTGTCACCAGTGATAGCCATTCAACATTCTACAAGGGGAGCCAATTGACGCATTCAATATTACAAGGCTAAAAGCAGTT
ATTACTTTTTTTCACTTTTAAAACAAAACGCAATCATGTAATTTTCAGTTAGTATAAAAATTGAATGCACCCTGAGTCAAAAATAAGCAGGTATCATATT
TTCCATATGGCCATTTGTAGCAAATCATACATTTCATTTTTGAGAAATGGTATATTTTTCAAAGTATTTTTCTGTGTGTTAATAAAACATGGAGAGAAAG
CTGTGATTCTTTCTTTCTATACATGGCAATAAGAGTGTACAATACTCAGTCAGACACGGTGGCTCATGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGC
CGGTGGATCATGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGGAACCCTCTCTCTATTAAAAATACAAAAATTATCCAGGCATGGTGGCACGC
AAGGCAATTATCTATAAACCCTGTGACAAGACTGGTAGCCTCAATTCTCCTAAGTAACATAAACATAACTCATA

Expression



Full and truncated open reading frames discovered in TCONS_00203663

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.