Detailed information on ENST00000583426

lncRNA-RNA interactions

Number of interactions: 85

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000182527 translocation associated membrane protein 2 protein coding ENST00000583426 532 296 UTR3 Trans
ENST00000292069 zinc finger protein 667 protein coding ENST00000583426 511 294 UTR3 Trans
ENST00000327473 tumor necrosis factor, alpha-induced protein 8-like 1 protein coding ENST00000583426 704 446 UTR3 Trans
ENST00000353047 cathepsin B protein coding ENST00000583426 675 438 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000583426 599 302 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000583426 535 289 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000583426 646 278 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000583426 603 291 UTR5 Trans
ENST00000504904 zinc finger protein 667 protein coding ENST00000583426 511 294 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000583426 565 284 UTR3 Trans
ENST00000591790 zinc finger protein 667 protein coding ENST00000583426 511 294 UTR3 Trans
ENST00000592189 zinc finger protein 667 nonsense mediated decay ENST00000583426 511 294 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000583426 612 292 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000583426 612 292 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000583426 618 293 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000583426 687 298 UTR3 Trans
TCONS_00017068 calponin 3, acidic novel protein coding ENST00000583426 512 311 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000583426 613 303 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000583426 613 303 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000583426 613 303 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000583426 613 303 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000583426 620 288 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000583426 739 454 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000583426 612 299 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000583426 782 432 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000583426 598 297 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000583426 612 299 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000583426 602 300 UTR5 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000583426 602 300 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000583426 608 293 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000583426 617 298 UTR5 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000583426 621 288 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000583426 621 288 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000583426 620 296 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000583426 620 296 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000583426 620 296 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000583426 620 296 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583426 681 418 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583426 681 418 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583426 681 418 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583426 681 418 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583426 681 418 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583426 681 418 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000583426 681 418 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000583426 689 437 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000583426 569 307 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000583426 600 290 UTR3 Trans
TCONS_00118358 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000583426 610 293 UTR5 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000583426 706 437 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding ENST00000583426 607 293 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000583426 607 293 UTR3 Trans
TCONS_00142174 LY6/PLAUR domain containing 6B novel protein coding ENST00000583426 607 293 UTR3 Trans
TCONS_00144404 miRNA novel protein coding ENST00000583426 514 300 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000583426 590 289 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000583426 590 289 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000583426 633 284 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000583426 618 265 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000583426 607 302 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000583426 605 299 UTR3 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding ENST00000583426 601 263 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000583426 619 299 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000583426 657 432 UTR5 Trans
TCONS_00174266 GRAM domain containing 1C novel protein coding ENST00000583426 604 294 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000583426 644 300 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000583426 614 294 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000583426 632 298 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000583426 632 298 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000583426 665 558 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000583426 743 558 UTR3 Trans
TCONS_00199319 sorting nexin 24 novel noncoding ENST00000583426 601 295 noncoding Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000583426 625 299 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000583426 617 299 noncoding Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding ENST00000583426 615 300 UTR5 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000583426 616 293 UTR5 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000583426 615 418 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000583426 615 418 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000583426 615 418 UTR3 Trans
TCONS_00237101 cathepsin B novel protein coding ENST00000583426 675 438 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000583426 675 438 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000583426 618 278 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000583426 625 302 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000583426 625 302 UTR5 Trans
TCONS_00243503 proprotein convertase subtilisin/kexin type 5 novel protein coding ENST00000583426 580 301 UTR3 Trans
TCONS_00243507 proprotein convertase subtilisin/kexin type 5 novel protein coding ENST00000583426 580 301 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000583426 600 295 UTR3 Trans

Sequence

>TCONS_00247058 (1706 nt)
GCAACCTCCACCTCCCGGGCTCAAGCAATTCTCATGCCCCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCACCACGCCTGGCTAATTTTTTTTGT
TTTGTATTGTTTTTTTTTTTTTTTAGTAGAGATGAGATTTCACCATGTTGGCCAGGCTGGTCTTCAACTTCTGATCTTAGCTGATCCACCTGCCTCAGCC
TCCCAAAGTGCTGGGATTATACGCCTGAGCCACCGCACCCAGCCTCAAATCATAAACTTTTTTTTGTTTTTTGAGACGAAGTCTCACTCTGTTGCCCAGG
CTGGAGTGAAGTGACACAATCTTGGCTCACTGCAAGCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGTG
TGCGCCACTGCGCCTGGCTAATTTTTTGTATTTCCAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAATTCCTGACCTCAGGTCATCCAC
CCACCTCGGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACTGTGCTCAGCCTCAAATCATAAACTTTTTAAAGGTTTATCCCTGACCCTCTAAATT
AGGTTATGTGCCTTGTTATATGCTCTTTTAGCACTTATCCTAATTGTGATTGTGTATTTATTATATGATTGTTTATTCAACAGTTTCTTTCAACAAATAT
TTACCAAGTGTTTAGTAAATCTTGTTTTGGATTGTAAGCTTCATTAAGGCAGAGTAAGGACTGGGTCTGTGGTTTCTCTTACCATGTGTACCTAGCACCT
AGCACAGTGCTTAGACATAGGGAGTACTTAATAAATAGTCATTGAATGTATACATTAAAATGGCGTTAATAATGCTGCCTATCTGATGAGGCTGTTGTGA
GCCTTCAATGAAATCGTGTGTAGGAAGTGCTAGTTTGCTCACAGGCTGGTGGTAACAGTCTACTGTGGTCATTGAGAGCAGTTATTGTGGACACAACCCC
CAGTTCTGGTCACCCCACCCACTAGCTCTGTGAACTCACATAGGTACTTAATATCTCTGATTTTTATTTTATTTATTTGTAAAATGGAACTAATAATTAC
AACCACCTTATAGGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCATCTCACTGCAACCTCCGCCTCCCAGGCTGAGGCAGGA
GAATGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCCAGATCGTGCTACTGTACTCCAGCCTGGGTGACAGAGCAAGACTACATCTCAAAAGAAAAA
AAAAAAAAAGTATTATTGAGAATATAATATAATTAACCTGAATAGGTTAATTATATTGTGGAACCTAAACCGTATAAATTTAAAATGCCTTAGAATGCCC
AGTCAGCAAGTGACAGTATTAGAAATCAACCTGGATTTTAGACCGCTGTGTGTTCATGGATAATGTTTGTGTGTTTAGGAGACTATTCTGAATAGTGGTT
CACAGTCCTTTACATGCATCCCCTGTGCATTGGATGCTTCACTAGCCTTTTCTGACTAAAGCATATGAAAATACAAGTGAAAAAGGCAAGTTATTACAGG
AATAACTTTTCATTTTCTCTAATTTTCATATTTTAAAAATTCATTTGTAAGCATTTGATACTTTAAACCTGTTTACAGGAACTTGGTATAAACCACCATG
TCCAGCC

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.