Detailed information on ENST00000583912

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000583912 522 282 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000583912 589 285 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000583912 501 276 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000583912 595 277 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000583912 623 282 noncoding Trans

Sequence

>TCONS_00216910 (560 nt)
AATCCTGGCCACTGCTCTTAATCGTCCCTCTCCTGCTTCAGGGTGGCATTGTGTGTCCCAGAGTGCCGGAGCGAGTCCCAGAAGAGAGGCGAGGCTAAGC
CCAGAGCGCTGGGTTGCTTCAGCAGGGAAGACTCCCTTCCCCCTGCTTCAGGCTGCTGAGCACTGAGCAGCGCTCAGAATGGAAGCCATCGCCAAATATG
ACTTCAAAGCTACTGCAGACGACGAGCTGAGCTTCAAAAGGGGGGACATCCTCAAGGCGAAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATCGCACGA
TCTTGGCTTGCTGCAACCTCCACCTCCTGAGTTCAAGTGATCGTCCTGTCTCAGCCTCCCGAGTAGATGGGATTATAGGCGCCCGCCACCACACCTGGCT
AATTTTTTGTATTTTTAATAGAGATGTGGTTTTATCATGTTGGCCAGGCTGGTCTTAAACTCCTGACCTCAAATGATCCACCTGCCTCGGCCTCCCAAAG
TGCTGGGATTACAGGTGTGAGCCACCATGCCCAGCCTACTAAATTATAGATCATTTCTAAT

Expression



Full and truncated open reading frames discovered in TCONS_00216910

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.