Detailed information on ENST00000586101

lncRNA-RNA interactions

Number of interactions: 102

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000217185 protein tyrosine kinase 6 protein coding ENST00000586101 613 296 UTR3 Trans
ENST00000310045 dermatan sulfate epimerase-like protein coding ENST00000586101 620 315 UTR3 Trans
ENST00000327473 tumor necrosis factor, alpha-induced protein 8-like 1 protein coding ENST00000586101 602 293 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000586101 607 283 UTR3 Trans
ENST00000375290 patched 1 nonsense mediated decay ENST00000586101 630 295 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000586101 595 290 noncoding Trans
ENST00000542869 protein tyrosine kinase 6 protein coding ENST00000586101 666 329 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000586101 654 290 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000586101 672 303 UTR3 Trans
ENST00000554879 pecanex homolog (Drosophila) retained intron ENST00000586101 604 262 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000586101 643 306 UTR3 Trans
ENST00000623752 TEC TEC ENST00000586101 694 302 noncoding Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000586101 638 318 UTR3 Trans
TCONS_00020768 processed_transcript novel protein coding ENST00000586101 653 298 UTR5 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000586101 666 302 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000586101 609 296 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000586101 672 303 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000586101 675 305 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000586101 618 288 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000586101 618 288 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding ENST00000586101 627 294 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding ENST00000586101 627 294 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000586101 612 268 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000586101 612 268 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000586101 677 301 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000586101 614 290 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000586101 607 283 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000586101 607 283 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000586101 607 283 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000586101 607 283 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000586101 668 295 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000586101 645 305 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000586101 645 305 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000586101 645 305 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000586101 592 307 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586101 620 306 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586101 658 289 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586101 661 305 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586101 645 303 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586101 658 289 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586101 661 305 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586101 645 303 UTR3 Trans
TCONS_00118358 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000586101 641 339 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000586101 607 273 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 627 317 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 623 296 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 627 317 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 623 296 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 627 317 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 627 317 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 623 296 UTR5 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586101 627 317 UTR3 Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000586101 625 311 UTR5 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000586101 683 316 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000586101 683 316 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000586101 683 316 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000586101 637 308 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000586101 637 308 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000586101 610 301 UTR3 Trans
TCONS_00152102 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000586101 666 300 UTR5 Trans
TCONS_00152103 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000586101 666 300 UTR5 Trans
TCONS_00152105 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000586101 666 300 UTR5 Trans
TCONS_00152107 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000586101 666 300 UTR5 Trans
TCONS_00152126 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000586101 666 300 UTR3 Trans
TCONS_00157915 cadherin 4, type 1, R-cadherin (retinal) novel protein coding ENST00000586101 681 332 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000586101 666 329 UTR3 Trans
TCONS_00160924 protein tyrosine kinase 6 novel protein coding ENST00000586101 666 329 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000586101 653 302 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000586101 653 302 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000586101 653 302 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000586101 617 320 UTR5 Trans
TCONS_00166381 GRB2-related adaptor protein 2 novel protein coding ENST00000586101 638 310 UTR3 Trans
TCONS_00174266 GRAM domain containing 1C novel protein coding ENST00000586101 642 293 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000586101 677 303 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000586101 622 304 UTR5 Trans
TCONS_00189321 transcribed_unprocessed_pseudogene novel protein coding ENST00000586101 627 286 UTR5 Trans
TCONS_00189329 transcribed_unprocessed_pseudogene novel protein coding ENST00000586101 627 286 UTR5 Trans
TCONS_00189333 transcribed_unprocessed_pseudogene novel protein coding ENST00000586101 627 286 UTR5 Trans
TCONS_00189336 transcribed_unprocessed_pseudogene novel protein coding ENST00000586101 627 286 UTR5 Trans
TCONS_00189341 transcribed_unprocessed_pseudogene novel protein coding ENST00000586101 627 286 UTR5 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000586101 688 315 UTR5 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000586101 629 321 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586101 658 300 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586101 658 300 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586101 645 306 UTR5 Trans
TCONS_00195828 LRP2 binding protein novel protein coding ENST00000586101 619 309 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000586101 636 307 UTR3 Trans
TCONS_00200504 Rho GTPase activating protein 26 novel protein coding ENST00000586101 592 307 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000586101 622 295 noncoding Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000586101 666 296 UTR5 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000586101 684 303 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000586101 684 303 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000586101 684 303 UTR3 Trans
TCONS_00235906 zinc fingers and homeoboxes 2 novel protein coding ENST00000586101 555 300 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000586101 691 295 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000586101 691 295 UTR5 Trans
TCONS_00243068 lincRNA novel protein coding ENST00000586101 582 276 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000586101 611 336 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000586101 611 336 UTR5 Trans
TCONS_00244326 transforming growth factor, beta receptor 1 novel protein coding ENST00000586101 624 292 UTR5 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000586101 666 306 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000586101 610 309 UTR5 Trans

Sequence

>TCONS_00252827 (1629 nt)
CTGTTTGATATTCCATTTTATCAATATGTTATTATTTACCTAAGCAGTCCATCATTGATGAATGAGTTGTAATGTTCCCTGATGTAGAAAATTCCTAATT
ATTATGCTGAAATGAACATCTTTGTTCATTTGGGCACTTACGTAAATACTCTTAAAAAGTAAAGTTCTAAGACAAAATATATCAATAAGGTTTTTTTAAA
TTTTTTTATTATTATTATTTTTTATGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAGTCATGGCTCATGGCAGCCTCAACCTCCT
GGGCTCAAGCCATCCTCTTACCTCAGCCTCTTGAGTAGCTGGGACCACAGGCACAAGCCACCATATCCAGCCAAGATTATGTTTTTATTTTCATTTCTTT
TTTTATGTTTACTAGATGTTTATAATTCCTTTGTTAATTGCCTATTAATGTATTTTCTCCATTTATTTCAGTTTTATTTTTCCCATTGGATCATTAGCCT
TGTTTGTGTACATATTGCTTTGTTATTTGTTTATAGATTTTGATTTTTTTTTCTCTTTGGCTTCACATTTGGAGTCATTCTGAAAAGAATCTTTGCTTTT
CAAAATTAAAAATATATGTATACATTTTCTCTGATACTTCTATTTTTTCTTTTTTCTTTTCTTTCTTTTTTTTTTGTTTTTTTTTTATTGAGACGGAGTC
TTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCCGAGTTCAAGCAGTTCTCTGCCTCAGCCTCCTGAGTA
GCTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTTTCTATTTTTAGTAGAGACGGGGTTTCATCATGTTGGCCAGACTGGTCTTGAACTCCT
GACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCGCCGTGCCCTGCCTATTTTTTCTTCATTTTCCATTTACGTCTT
TTGATCCAACTGGAATTTATTTCATCTTGGGAGTAAGGTACAGAATCTAGCTTTACTTTTAAAAAAATTAATAGTTATTATTCTGTGTAAACTTGGACAA
ACATACAACCCAAAAAACAAATAAGAATGAGGCCCTCGTGGATTGAGTTAGGGATAATTGACATTTTTCACAATATTGAAGCTTATTCAGGGACACAGGT
TCTCCCCATCTTCATTCCTCAAGTCCTCCCGTGTACGCGGCACCTCCAGCCTCCTAGGTGGCTGCTCAGGCGGGAAGCCTTAGATTCCTCTCTTCGCTTC
ATACTCAGTCCTTGGAACAGGTCTTAGAAATATGTTCCACAGTCCAGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGG
ATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGGTCAACATGGTGAAACCCTGTCTCTAATAAAAATACAAAAATTAACCGGGCGTGGTGGCGGGTGCCT
GTAGTCCTGAGAATAGCTTGAACACGGAAGGCACATGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGAATGACAGAGCAACACTCCGTCTC
AGAAAAATAAAGAGAACAAAAAAAGAAATA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.