Detailed information on ENST00000586240

lncRNA-RNA interactions

Number of interactions: 73

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding ENST00000586240 613 304 UTR3 Trans
ENST00000307792 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein coding ENST00000586240 536 300 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000586240 628 294 UTR3 Trans
ENST00000336787 RAB27A, member RAS oncogene family protein coding ENST00000586240 654 308 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000586240 610 293 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000586240 557 305 UTR3 Trans
ENST00000396307 RAB27A, member RAS oncogene family protein coding ENST00000586240 654 308 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000586240 574 298 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000586240 612 292 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000586240 568 291 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000586240 590 289 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000586240 606 295 CDS_UTR Trans
ENST00000547865 spermatogenesis associated, serine-rich 2 protein coding ENST00000586240 643 304 UTR3 Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000586240 615 289 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000586240 532 283 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000586240 650 304 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000586240 615 287 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000586240 557 294 UTR3 Trans
TCONS_00025758 zinc finger, MIZ-type containing 1 novel protein coding ENST00000586240 600 294 UTR5 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding ENST00000586240 600 294 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000586240 600 294 UTR5 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000586240 631 291 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000586240 631 291 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000586240 642 288 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000586240 621 304 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000586240 612 297 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000586240 613 304 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000586240 613 304 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000586240 609 292 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000586240 609 292 UTR5 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000586240 600 302 noncoding Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000586240 654 308 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000586240 610 293 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000586240 610 293 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000586240 610 293 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586240 604 311 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586240 602 291 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586240 604 311 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000586240 602 291 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000586240 519 311 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000586240 574 310 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000586240 604 292 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000586240 605 294 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000586240 622 293 UTR3 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding ENST00000586240 621 290 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586240 605 306 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586240 605 306 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586240 605 306 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000586240 682 294 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000586240 666 291 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000586240 666 291 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000586240 666 291 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000586240 615 271 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000586240 615 271 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000586240 602 284 noncoding Trans
TCONS_00180671 transketolase novel protein coding ENST00000586240 615 285 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000586240 615 285 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586240 606 295 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586240 607 291 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586240 606 295 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000586240 553 298 UTR3 Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding ENST00000586240 612 276 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000586240 612 276 UTR5 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000586240 626 303 UTR5 Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000586240 516 290 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000586240 516 290 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000586240 633 291 UTR5 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000586240 616 305 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000586240 670 291 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000586240 625 304 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000586240 619 292 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000586240 628 294 UTR3 Trans
TCONS_00256068 shroom family member 4 novel protein coding ENST00000586240 576 306 UTR3 Trans

Sequence

>TCONS_00256068 (2563 nt)
CCGCTTCCGCCTGGCGTAGGAGCTGAGGCATGGCCTTGTTCTCCAGCTGAGAGGACGATCGTCCTTATAGGAGAGGCCGAGTCTCCGAGGGCAATTTCAG
AGGTCTGGTGCGAGGTGGGGGAAGCGGCGCGGCGTCGATGACGACTTCCTTACATCGCCCCCGACCCCCGCGTTCTCTTGTTAACTTCTGTGCATTGTTG
CCTGTCTGCACTTTCCGTCTCCAAAACCTTTGCTCTCCTCACCCCGTTTTCCCTTGTAATTATACCCCAGCGATCACTAGTCTGGGTTCGAAGTGATTGT
GTGTCTCCATAATTGACCTGGTTGCCCCCGGTTATCCCAGAAGTCAAAGATGACAGAGAAAAAAAGGAAGAGCGAGGGGCTTATCTCGTGTTCTCTACGT
CAGACTCCTCTTCCCCTGTCCTTCCTGGGTGATCTTTATCCTTCCCAGCACTGTTCTTTCTTAAGTTAAGCACCAAGGAAGAGGGCAACTGCTTGGGCGC
TGTTGGCACTCCGAAGCAGCCGCAGTGGTTCGAGATTGCCAGTCGGACTAGCCAAGGGAGCTGCTGAGTGAGTGGTTTTCGAGAACGCTCTAGATTCTGG
CAACAGTTAGGCCAGATTATTGGAAGTGGGGTTGGAACAGAGTTGTGGGTAGTCATACTTGTTCTAATCCTAAAGCAGAATTGACAAGAAGGTTCTAGAA
GTTTGGAGCCCTTTCCTTATCAGCTGCGGGTTAGTCTGACCCTTTTGTTCAAGATATCTACAGTGCCCTCAGTCTCTTTGCAACATACTTTATATCTTCA
TACCAAGCCCGTTGTGTCTTCAGGCTGGGTAATTTGAGGCGGTGATGTAGAATTAGTTCATGAGATCTGAAATCAGGATTCTGAGATTTTTACTATCTAA
TGAGTTCGAAATATAAGAAGTACTCGGACGCAATGAATAGTTATCAAGCTTGAGGGTGGTTACCACAGCCAGATCTCAAGTTCCTGATCTGCTGGGAGCT
GAGGGGCCTGACAAAGTGTAATAGGCCCCTGGGATATCAGAGAAGCCAGGACACCAGAGTCCAGTCTCTGTTCTTAATTTTGAGCTTTCATGTTGTTCCT
ACTTCTTCCTAGATATTTAAAGCTAAGCATCATCAACCCTTATACATCATTAAAGAGCTGCACAATGGGAAACAAAATTCCTCCCAGTGCAGACGGAGCT
TAAATTAATTGTAGAGATTTACTTGTATTTGGAAAGAGTTCAGTGGTTCTTTATACTGTAAATAGGGATTTGGCCACAGGTTATTTATTTTTTATTTTTT
GAGACGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGTAGTGGCGCGACCTCAGCTCACTGCAAGCTCCGCCTCCTGAGTTCACACCATTCTCCTGCCTCA
GCCTCACCAGTTGCTGGGACTACACGTGCCCACCACCACATCCGGCTAATTGTTGTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCCTGTTAG
CCACGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACTGTGCCGGGCTGGCCATAGG
TAATTTTAAAAACTCACCCTACTCATTGTAAATCTCTGATGTAGAGTGTCCCTATTTTGGACTTCATTTCATAGCCTCCTATCTTAAGCAAATACATTTC
TTCAATCACAGCCTTAGAGGATAGTCTATCATAAAATTGGAGTAAATGAACCTGAAGACATATAATAAAATAGGTTATGCTGTAATGTGACCACATCACA
CAAAACATGGTATTTGATAGCAGTACAACAAAATAAGGTAAACTACCTTATTTCATGGAATTTAAGTGTCATTAGGCTGGGTGCAGTAGCTCACACCTGT
AATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGGTCAGCTGAGGTCGGGAGTTTGAAACCAGCATGGCCAACATGGCAGAACCCTGTCTCTACTAAAAAT
ACAAAAATTAGCGGGGCGTGGTGGCACACACATGTAATCCCAGTTACACGGGAGGCTGAGGCAGGAGAATCGCTTGAACTCAGGAGGTGGAGGTTGCAGT
GAGCTGAGATCGGGCCATTGCACTCCAGCCTGGGTGACAAAGTGAGATTCCATCTCAAAAAAAAGTCATTGATTGCAGAATGCAAATTATTTTATCTGTC
ACTAAGAAAATGTAACTGTAAATTAAACATGACAACATGCATTATTCCTGTAGTTCAAATAGTGACAGAAAAAAATTAATTAAAAAAAGAAAAAAGACTG
GGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATTACCTGAGGTCAGGAGTTCGAAACCAGCCTGACTAATACGGTGA
AACCCCATCTACTAAAAATACAAAAATTAGCCAGGTGGGGTGATGCTGTAATCCCAGCTAGTCAGGAGGCTGAGGCAGAGGTTGTGGTGAGGGGAGATCA
TGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAAAAAAAAATCAATT

Expression



Full and truncated open reading frames discovered in TCONS_00256068

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.