Detailed information on ENST00000586458

lncRNA-RNA interactions

Number of interactions: 46

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000327473 tumor necrosis factor, alpha-induced protein 8-like 1 protein coding ENST00000586458 629 284 UTR3 Trans
ENST00000477205 calcium/calmodulin-dependent protein kinase II gamma processed transcript ENST00000586458 617 283 noncoding Trans
TCONS_00001594 lincRNA novel protein coding ENST00000586458 635 284 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000586458 706 283 UTR3 Trans
TCONS_00030132 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000586458 617 283 CDS_UTR Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000586458 693 286 UTR5 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000586458 644 286 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000586458 644 286 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000586458 635 279 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000586458 681 283 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000586458 601 287 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000586458 601 287 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000586458 673 278 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000586458 673 278 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000586458 673 278 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000586458 673 278 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000586458 673 278 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000586458 673 278 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000586458 673 278 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000586458 608 285 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000586458 637 285 UTR3 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000586458 618 287 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000586458 618 287 UTR5 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000586458 605 277 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586458 630 293 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586458 630 293 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000586458 630 293 UTR5 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding ENST00000586458 603 279 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000586458 644 279 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000586458 647 284 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000586458 647 284 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000586458 647 284 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000586458 666 284 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000586458 631 284 UTR3 Trans
TCONS_00190498 palladin, cytoskeletal associated protein novel protein coding ENST00000586458 624 280 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000586458 607 279 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586458 652 285 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586458 652 285 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586458 663 284 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000586458 663 284 UTR3 Trans
TCONS_00227594 GLI family zinc finger 3 novel protein coding ENST00000586458 513 215 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000586458 649 284 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000586458 673 285 UTR3 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000586458 614 277 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000586458 614 277 UTR3 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding ENST00000586458 592 281 UTR3 Trans

Sequence

>TCONS_00253752 (2673 nt)
CCGTTAGTCGCCGCGCGGTGCTAGCTGCCGGCGCTCCCCTCCGTTTGCACCCACGGCCGCCCTATTGCGGCTGGCACTACGCTTCTGCCAGGACCCCGGC
TCCCTTTTCCGTTGACCTGGTGTTCGTTTTCCATGTGTTGCTGAGAGATGGATGTTAAAAATCAACACCAGGACTACAGTAAGGCTGAAATCATTGAAGT
GCTTGGAGTGCAGAACTGAAAGAGATGGAGTCTCGCTCTGTCACCCAGCCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCTCCTCCCGGAT
TTAGGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGGCGCCTGCCACAACTCCTGGCTAATTTTTTGCATTTTTAGTAGAGATGGGG
TTTCACCATGTTAGTCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGTCTCAGCCTCCCACAGTGCTGGGATTACAGGCGTGAGCCACCGCGCC
CAGCCGATTTATGCCCATCTTTACTTCTTTTTTTTGACTTTTGGTTTAGCATATAGCATGTTTATTATTCTTGTTTAAGCCTTTCCTCATTTTTAAAAAT
GGTGGCAAAGTATACATGTAACATAAAATTTACCATCTTAACTATTTGAGTATACAGCTCAGCAGCATTAAGTATATTCCCATTTTTGTACAACCAACAT
CCACAACTTTTTCATCCTGTAAATGTGAAACTATATCCATGAAATAATAACTACCCTTTTCCCCCTGCCCCCAGCCCCTGGCAACCACGACAAGAAACCT
ACAAACTCTCACTACAAGCGTTAATAGCCTAAAAGTGGGAGACCAGTAATACTTTCTGATTTTATGAGGTGGACTACTCTAGATACTTCATATGAGTGGA
ATCATAAGTAGTTATCTTTTTGTGATTGGCTTATTAGAATATCCTCAAGGTTCAGCCACATTGTAGCATATGTCAAAATTTCCTTCCAAGGCTGAATAAT
ATTACATTGTATGTATATGCCACATGTATTAGTCTGTTTTGTGTTGCTATAAAGGAATACCTGAGGCTGGGTAATTTATAAAGAAAAATGGTTTATTTAG
CTTATGGTTCTATAGGCTGTACAAGAAGCATAGTGCCAGCATCTGCTTCTGGTGAGGCCTCAGGAAGCTTACAATTATGGCAGAAGGCAAAGGGAGAGCT
AGCATATCACATGGCAAGAGGGAACAAAAGGGAGAGGGAGGAGGTGCCAGGCTCTTTTAAACAACTAGCTATAGGATGAACTCATATCCATGTGGAGGAC
ACCAAGCCATTCATGAGATCCACCCCATAATCCAACACCTCCCACTAGGCGCCACCTCCAACACTGGGGGTCACATGTCCGTGTGAGATTTTGAGGGAAC
AAATATCCAAATCATATTACCACATTTTGTTTATCCATTCATCCACTGATGAACATCTGGGTTGTACGTATTTCTTGGTTATTGTGAATAATGCTGCTAT
GAATTTCTCCTTTTTTTATTTAAGTACTTAACATTCCTCTCAACTCTGCTTTAGCTGTATCCTTCCAATTTTGATATGCTGTTGTCACTTTTTCATATTT
CAAAACATTTTCCCCTTATTTATTCAATGATCTGTAGATCTAGAAGTGTGTTATTTAATTTCCATGTATTGAAGGACTGTATAGGTTTCTTATTATTGGT
TTCTAATGCACATTCCCTGTAATGTGGCAATCTTTTGAAGTTTATTGTGACTTATGGTCCAGCCAATAGTCTATCATGGGGACTGTTCAGGTACATGAAA
AGAATGTAATTTTTCAATTGTGGGTATGGTGTTCTGTAAACAACAATTAGGTCATGTTGACTGGTGTGGTTCATATCTTCTATACAGTTGTCCCTTGCTA
TCCACAGGGGACTGGTTCCAGGACACCTTGTGGATACCAAAACCTACAGATGCCCAAGTTTGTTATATAAAATGGTGTAGTAGTTGCATATAACCTATGC
ACAACCTTCTGTATATTTTAAACCATCTCTAGATTTTTTATAATACTTAATACAATGTAAATGCTATGTAAATAATTTTATACTGTATTTTAAAATTTGT
ATTTTTTTACTGTCATTGTGTTTTTTCTGAATATTTGTGCATTGCTATTGGTTGAATCTGCATATATGAAGAGCTGATTACATATACTACTGAATTTCTT
GCCTACAAGTGCTATCAATTACTGAGATATAATTGTGGATTTCCAATTATGCTTGTGGATCTATTTCTTTTGTTCTGTTAGTTTTTGCTTCATAAAATTT
AACACTCTCATTATAGGTTCATACTAGCATACATATTCCTGATGAACACAGTCATGTGTCATGTAATAACATTTTACTCAATGATGGACACATATACAAT
GGTGGTCCCATAAGATTACAATGGAGCTGAAAAATTCCTATCACTTGTGGACGTTGTCATGCAACATATCACTCAGGTGTTTGTGGTGACGCTGCTGTAA
ATAAACCTACTGTGCTTCCAGTTGTATAAAAGTATAGCACATGCAATTATGTATAGTACGTAATAGGTGATAATAATAAGTGATTACATTACTAGTTTAT
GTAATTTATTGTACTATTTGTATTATTATTTTAGACTGTACTCCTTCTACTTATTAAAAAAAAAAAGTAACTGT

Expression



Full and truncated open reading frames discovered in TCONS_00253752

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.