Detailed information on ENST00000587426

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00156217 antisense novel protein coding ENST00000587426 671 310 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000587426 1152 487 UTR5 Trans

Sequence

>ENST00000587426 (715 nt)
CCCTGTCGGGTTTTACCTCCCCCCGGGAGAGCTCAGCCCTGGATCCCGGCGGGCGGCGGAGCCTCTCTGGAGCCCGGACGGGACAGCCCACCAGGGTCTG<br />CTTCTGTGAGGGGCCGAGGCGTCATTCCGCGAAGCCTTCTCCTTGCTGTTGCCATGTGAAGAAGGATGTGTTTGCTTCCCCTTCTGCCATGATTGTAAGT<br />TTTCTGAAGCCTCTCCAGCCATGCCAAACTAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAG<br />CCAAAGGAACAAAGCTGGAGGCATCACACTACGTGACCTCAAACTACACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGAT<br />ATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGG<br />ATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAG<br />ATGGATTAAAGACTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGAGCAAGGACTTCATG<br />TCTAAAACACCAAAA

Expression



Full and truncated open reading frames discovered in ENST00000587426

In silico ORF/peptide predictions
>peptide 1 (93 aa)
MPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGITIQDIGMSKDFMSKTPK

>peptide 2 (82 aa)
LSGFTSPRESSALDPGGRRSLSGARTGQPTRVCFCEGPRRHSAKPSPCCCHVKKDVFASPSAMIVSFLKPLQPCQTNWKKLL

>peptide 3 (52 aa)
PCRVLPPPGRAQPWIPAGGGASLEPGRDSPPGSASVRGRGVIPRSLLLAVAM


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT115404 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 4.0E-103)