Detailed information on ENST00000587700

lncRNA-RNA interactions

Number of interactions: 64

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000268097 hexosaminidase A (alpha polypeptide) protein coding ENST00000587700 631 312 UTR3 Trans
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000587700 563 277 UTR5 Trans
ENST00000338758 parvin, beta protein coding ENST00000587700 619 300 UTR3 Trans
ENST00000423516 transketolase protein coding ENST00000587700 573 275 CDS Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000587700 524 281 noncoding Trans
ENST00000472528 transketolase nonsense mediated decay ENST00000587700 573 275 UTR3 Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000587700 524 261 UTR3 Trans
ENST00000550527 apoptotic peptidase activating factor 1 protein coding ENST00000587700 620 280 UTR3 Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000587700 598 282 CDS_UTR Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000587700 570 279 UTR5 Trans
ENST00000620139 melanoregulin protein coding ENST00000587700 585 279 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000587700 631 281 UTR5 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000587700 618 280 UTR3 Trans
TCONS_00038233 protease, serine, 23 novel protein coding ENST00000587700 611 286 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000587700 601 270 UTR5 Trans
TCONS_00053421 apoptotic peptidase activating factor 1 novel protein coding ENST00000587700 620 280 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000587700 642 280 UTR3 Trans
TCONS_00056597 C-type lectin domain family 7, member A novel protein coding ENST00000587700 603 251 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000587700 601 251 UTR5 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000587700 636 275 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000587700 631 338 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000587700 631 338 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 616 276 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 616 276 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 515 281 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 616 276 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 616 276 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 616 276 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 616 276 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000587700 616 276 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000587700 594 280 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000587700 619 281 UTR3 Trans
TCONS_00138864 Metazoan signal recognition particle RNA novel protein coding ENST00000587700 532 244 UTR3 Trans
TCONS_00138868 WD repeat containing planar cell polarity effector novel protein coding ENST00000587700 532 244 UTR3 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000587700 623 276 UTR5 Trans
TCONS_00159951 zinc fingers and homeoboxes 3 novel protein coding ENST00000587700 612 302 UTR5 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding ENST00000587700 602 281 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding ENST00000587700 602 281 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding ENST00000587700 602 281 UTR3 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000587700 608 281 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000587700 608 281 UTR5 Trans
TCONS_00173730 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000587700 608 281 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000587700 573 275 UTR5 Trans
TCONS_00180673 transketolase novel protein coding ENST00000587700 573 275 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000587700 602 281 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000587700 639 280 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000587700 639 280 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000587700 607 275 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000587700 607 275 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000587700 583 284 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000587700 608 251 UTR3 Trans
TCONS_00225244 family with sequence similarity 115, member C novel protein coding ENST00000587700 631 280 UTR3 Trans
TCONS_00225246 family with sequence similarity 115, member C novel protein coding ENST00000587700 631 280 UTR3 Trans
TCONS_00226448 collagen, type XXVIII, alpha 1 novel protein coding ENST00000587700 584 280 UTR5 Trans
TCONS_00226450 collagen, type XXVIII, alpha 1 novel protein coding ENST00000587700 584 280 UTR5 Trans
TCONS_00226462 lincRNA novel noncoding ENST00000587700 584 280 noncoding Trans
TCONS_00226463 lincRNA novel noncoding ENST00000587700 584 280 noncoding Trans
TCONS_00226468 lincRNA novel noncoding ENST00000587700 584 280 noncoding Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000587700 610 295 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000587700 674 281 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000587700 637 258 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000587700 636 280 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000587700 636 280 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000587700 659 281 UTR5 Trans

Sequence

>TCONS_00252827 (2375 nt)
ACTTTGAAGAAAGACTTCTCGACGCCGAGACACTGCTGGTGGTACTCGATCCCAGTGTGTTTTATGTATTACAGCACATCTTGGTTTGGACAGACCACAT
AGTGGCCAGTGGCTGCCATATTGGACAGCACTGGTGTAAGAGGGTCCATCTCTCACTCCCACATCAATGTCCAATGGTTTCTCATTCAACTGGAAAGTGA
AATTGGAAATCTTGTGAAAGATGAAGAATTATGAATGTGGTACGTTGAACTGCTGGGCCCACCCACAAGACATCAACAAATGAAGGTGTGGAAGGGTTAA
ACCAGTTAACGTTGAACAAAGGACAATGGATATGATGAGTTACAAGCTGAGTTGTATCCCTCCACAATTCACATGTTGAAGTCCTAACCTTTAGTACTTC
AGGGTGTAACTTATTTGGAAACTAGATCATTATAGAAGTTAAAACGAGGTCATAAGGGTGGGCCCTAATCTTACTAACCTGTCCCTATAAAAGGGAAATT
TGAACACAGTGACACCCAGAGGGAAGATGATGTGAAGACAGAGAGAGAAGACAGCCATCAGCAAGCCAAGGAGAGAAGTCTGGAATGGATCCTCCCCTCA
CAGCCCTCAGAAGGAACCAAGCCAGCCAGCCTCTCAATCTCACACTTTTAGCCTCCAGATCTGTGAGACAATAAGTTTATGTTGTTTAAGCCCTCCAGTC
TGTGGTACTTTGTAATGTAGCCCCAGCAAACTAAAACATGGGTTGGCTGGTGGCATTAGAACAAGTTGCCCATGAAAAGGTTACAGGCAGCCTATAGGAC
AATTGAAGATGCATTCTACTTTCTGCCTGCACTGTGCATCTAGTGAAGAAAAAAAAAAAAAACACCTCAATAACTATCAGTGATTCATGGTGTCATGGAG
GCTCCCTCTGCACATGTCTTGGGGAAAAGAGAGGATAAACGGTGGATAGTGGAAGTTCAAGCCTCCATCCCTTATTATCTGTGTAATGGGCCAACACACC
TCATTCCTTGAGTTCCTGGCAAGTAGAACTTTCTCCACTAAAGTTTCTGACAAAGGCCTTCTCCAAATAAGACCCAATGAGACATTTGGGATTCATTGCC
TCCTACTTTCTAGAAACAAATAGAAAAGGCAGGAAGCACAGCTAACAACATTGGTGGCCAGCTGAAGGAGTTTACACACCCTACCATGACCCTGGTAGAG
TAGAGACAGCATGAGTTGAAGCCTGCTACTCAGAATCCACTGCAACTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTG
TGTATGTGTGTGTTTTCTGCAGTTCCAGTCACAGATCTGCCTGCCACACAGTGGAGCCCTCTCTTGGACTCTGAATGCATAGCCCAGCAAAGCCAAGCAA
CTGAATCTCACCATCAGAACAGCTGAGAGCAGCTCCATCAAAGCAGTCAGTGGTACATGTGATCAATTTGTTTTTTGTATTTCTGGGCTACAAAATGTCT
CTTAAGTTTCATCATTGGACCTATCGAGAAAGGAGAAATCAATTGAGTTGTGGAGATAAAAGAAAATTACACACACCCATGCATGACCAGGCAACAGAGT
CCCATGCCTGGGGCTAGGCTGGGTGGCTGGCTGTGCCATTGACTTTCAGGGTGTGTAACTTTTGCCATCTGTATGGGGATGATAAAACTTCCATGTGATC
CTTCAGCTGTGGTGAGGATTCTGTGAGCTGGAAGGTGAAGAGCATGGTGCATTCTGTGCCTGATGTGGACTGTGCACCCAATGGAGGAGGGATATCATCA
TCTCAAACCATACCCCTATCCCCATTTTACAGGTGAGGAAACTGGGGCATAGAGAGGACCAGTTCCTCTGAGGTCAGCCAGCAAGTGCACGGCAGAATCA
AGTCTCAAACTGGGAGTTGTCTGCTCCCTGAGCCCAGGACTTTCATTGAAAGCCTCTGAGTCACCAGGGGCATTGAAGCCCCTCTGGGTGTCTCAAGCAA
CCCCACAAGGACTGTGTTTTCAACTTATAGATGAGAAGACCACCAGCCTGGACAACATGGCAAAACACCATCTCTACAAAACAAAAAGAGGATAGCGGCC
AGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTTGATCACGAGGTCAAGAGATCAAGACCATCCTGGCCAAAATGGTGAA
ACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGACGTGGTGGCACGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAAAATCGCTTGAAC
CTGGGAAGTGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGCGACAGAGTAAAACTCCGTCTC

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.