Detailed information on ENST00000587795

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000587795 527 262 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000587795 538 266 noncoding Trans
ENST00000560870 sense_intronic sense intronic ENST00000587795 534 266 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000587795 542 298 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-... novel protein coding ENST00000587795 605 265 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000587795 625 265 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 4... novel protein coding ENST00000587795 607 269 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000587795 603 266 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000587795 604 269 UTR5 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000587795 507 269 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 li... novel noncoding ENST00000587795 627 270 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 li... novel protein coding ENST00000587795 627 270 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000587795 555 233 UTR3 Trans

Sequence

>ENST00000587795 (1659 nt)
GGCCGAGGGAAACACAACCCCAAGCAGCCTGGAGTAAGTGGTCCCGAGGCAGCTCAAGACAGTTTGGTTTTATTCATTTCAGAGAGACAGGAATTGCAGG<br />GAAAATCATGAATCAGTGCCTGGAAGGTGTAAGTTCCATTGGCAGAAAGGGTGGGACCTGTGGAAGGGGGGTTAGAAGGCACAGGTAGTTGAGGGATTCT<br />GTAGGTGGCAGCTGGTTGAGAGTGTTGAATCTTTGTCTAAAGTTTGGAGGAGGTAGGAAGGAATGCTGAAGGAAGGGGGTCTGTTATCTGCCACTTCATT<br />CCATCCCAGCCAAAAAACAGACCTGTTTCTCGAGATTTTATGAATTCTAAGGCGTAACTTTACCTTTGCCTTGCGTGGCCTTAGGTCTTGTTTGTAATTT<br />GGTATCTTGTTGCCACAAGGAGTCTGTTTTTCCAGTCAGATAATGTCTGTTTTTACATGAATGTGCGTCAGTTGCTGCATGTAAACTCCTAAAGGGAGAG<br />GGTATAAGGAGACCTGTCTCACCTCCCATCCTGTCATACAGAGGCACTCAATTTTCAGGGTTTTTTGGGGGTTCCCTTGGCCAAGAGCCAGTCACTTCAC<br />TTAGCTGGGAAGGTACTTTGTTTTTGTTTTTGTTTGAGACAGAGTCTCCTGTAGCCCAGGGTGGTGTGCAGTGGCTCTATCTTGGCTCACTGCAACCTCC<br />ACCTTCCGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGAGTGGCTGGGATTACAGGCATGTGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGA<br />GATGGGGTTTCACCATGTTGGCCAGGCTGTTCCTGAACTCCTGACCTCAAGTGATCCACTGGCCTCGGCCTCCCAAAATGCTGGGATTACATGTGTGAGC<br />CACCTCACCAGGCCAGAAGGTATGTTTTTATTTTTAGTTTACAGGTTGAAGGCTGGACTTTTATAAGGTACATGAGGAGACAAACCAGATAAATGCTTGA<br />TTGGTTGCAGAGATGCAGTCACCTTATTTGGACTTGTCAACCCGAAATAATCGAAAGTTTCAGATTTCAACTGGAAGAGTTTATTCAAGCAAAAAGATAG<br />CAATGGCCCATTTGGGAAAAACACAGACTCCAGAGAAATGGACTCAGTACTCCAAAATTGGAAGTTAAGTTCTTGCTTATATTACTGGGAAAAGAGGTCC<br />TGATCAGATCCCAAGAGAGTTCTTGGATCTCATACAGGAAGGAATTCAAGACGAGTCGGAAAGTACAGTGCAAAGAGAGTTTATTGAAAGCTACTCTGGG<br />CCAGCATGATGGCTTAGGCCTGTAATCTAAGCACTTTGGGAGGCCGAGGTGGGAGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGGCAATATAGT<br />GAAACCCCATCTCTTCCAAAAATAACAAAAATTAGCCGGGTGTGGTGGCCTGCACCTGTAGTCCCAGGTACTCGGGAGGCTGGATGGGACAATCACTTGA<br />ACCCGGGAGGCAGAGGTTGCAGCCCAGCTGAGGACACGCCACTGCACTCCAGCTTGGGTAACAGAGTGAGACCCCATCTCAAAAAACAAAAACAAAACAA<br />ACAAACAAGACAGAGTTCAAGACCAACGTGGCCAACACAGTGAGACCCTGTCTCTATTT

Expression



Full and truncated open reading frames discovered in ENST00000587795

In silico ORF/peptide predictions
>peptide 1 (68 aa)
MCHHTRLIFVFLVEMGFHHVGQAVPELLTSSDPLASASQNAGITCVSHLTRPEGMFLFLVYRLKAGLL

>peptide 2 (61 aa)
PRETQPQAAWSKWSRGSSRQFGFIHFRETGIAGKIMNQCLEGVSSIGRKGGTCGRGVRRHR

>peptide 3 (51 aa)
MQSPYLDLSTRNNRKFQISTGRVYSSKKIAMAHLGKTQTPEKWTQYSKIGS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT061196 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 2.0E-31)