Detailed information on ENST00000588369

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000549365 DNA-damage regulated autophagy modulator... nonsense mediated decay ENST00000588369 507 303 CDS_UTR Trans
TCONS_00007944 kin of IRRE like (Drosophila) novel protein coding ENST00000588369 513 308 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000588369 607 298 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1,... novel protein coding ENST00000588369 611 308 UTR3 Trans
TCONS_00244728 chromosome 9 open reading frame 91 novel protein coding ENST00000588369 508 307 UTR3 Trans

Sequence

>ENST00000588369 (1224 nt)
TGAACAAAGGGCTAGATTTGAAGTTTGGGATACTTGGAATATTGGCAGATAAAACAGCCTATACATTGTTACACTTTAGATCTGCTAAAGGAGCTCTAAA<br />TAATTCACACGCCCAGTCACAGATTTAAAAAATAGATGCAGAGATGTATGTTTTTTCTGATAAAAGAGTTTACATCATTTGTATAGTGATAGAGTAGATC<br />AATGCATTTCACCAACAACTCAAATGAAGACAACCCATTAATTAGAACAAACACATTGTCTTATATGTGCTTGGTAGTTGAATATTACATATTAAGAACT<br />TTGGGCTGGGCTCGGTGGCTCACGCCTATAATCCCGGCACGTTGGGAGGCCAAGGTGGGTAGATCACCTGAGGTCAGGAGTTCAAGACTAGCCTGGCCAA<br />CATGGCGAAACCCCATCTCCACTAAAAATACAAAAATTGAGCTGGGCATGGTGGTGTGTGCCTGTAATCCCAGTTACTCAGGAGATTGAGGGAGGAGAAT<br />TGCTTGAACCCATGAGGTGGAGGTTGCAGTGAGCTGAGATCACATCACTGTACTCCTCCAGCCTGGATGACAGAGCGAGACTCCATCTCAAAAAACAAAA<br />AAAAAAGAACTTGCATTGGACATTGAATGAATATGCTAGAATCATCTTTTATTGTAAAATAGTTGAGGGGGAACCTGTGATTGTCTAAGAAACTTTATTG<br />TTTTCTTCTGTAGTATTTTTATATGAAACAAAATCCGTATCAATTACAACTTTAATAAGTGATTTTCCAACCTACATGATAACTTTATTCCTTGTGCTGG<br />AATAAACTGTCTCTTGCCTCTTCCTTCCTTTCTCCTCTGAAGCCTTTAGGAAGTCAGTGATTAACACATGTCCCTAGAGGACCCAAGTGGTGTGGAAAAA<br />AACCTATGACTTGAGGAGAAAAGCAAGGGTTTTTCACCATGATCTTCCTAAAGACTCTTACCTAATTTCTACTGCGTCCTTTCCCTGTTGGTTTTTATTA<br />TCATTCTTCCCACTTTCAAAAGAGGGAATGGTTGGCCGGGCGCGGTCTTGTATGTGCTTGGTAGTTGAATATTACATATTAAGAACTTTGGGCTCGGCTC<br />GGTGGCTCACACCTGTAATCCCAACACTTTGGGAGGCCGAGGAGGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCC<br />CGTCTCTACTAAAAATACAAAAAA

Expression



Full and truncated open reading frames discovered in ENST00000588369

In silico ORF/peptide predictions
>peptide 1 (95 aa)
MHFTNNSNEDNPLIRTNTLSYMCLVVEYYILRTLGWARWLTPIIPARWEAKVGRSPEVRSSRLAWPTWRNPISTKNTKIELGMVVCACNPSYSGD

>peptide 2 (51 aa)
MVGRARSCMCLVVEYYILRTLGSARWLTPVIPTLWEAEEGGSPEVGSSRPA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT066067 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q96CB5|CH044_HUMAN (Evalue: 2.0E-19)