Detailed information on ENST00000588369

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000588369 507 303 CDS_UTR Trans
TCONS_00007944 kin of IRRE like (Drosophila) novel protein coding ENST00000588369 513 308 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000588369 607 298 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000588369 611 308 UTR3 Trans
TCONS_00244728 chromosome 9 open reading frame 91 novel protein coding ENST00000588369 508 307 UTR3 Trans

Sequence

>TCONS_00244728 (1223 nt)
TGAACAAAGGGCTAGATTTGAAGTTTGGGATACTTGGAATATTGGCAGATAAAACAGCCTATACATTGTTACACTTTAGATCTGCTAAAGGAGCTCTAAA
TAATTCACACGCCCAGTCACAGATTTAAAAAATAGATGCAGAGATGTATGTTTTTTCTGATAAAAGAGTTTACATCATTTGTATAGTGATAGAGTAGATC
AATGCATTTCACCAACAACTCAAATGAAGACAACCCATTAATTAGAACAAACACATTGTCTTATATGTGCTTGGTAGTTGAATATTACATATTAAGAACT
TTGGGCTGGGCTCGGTGGCTCACGCCTATAATCCCGGCACGTTGGGAGGCCAAGGTGGGTAGATCACCTGAGGTCAGGAGTTCAAGACTAGCCTGGCCAA
CATGGCGAAACCCCATCTCCACTAAAAATACAAAAATTGAGCTGGGCATGGTGGTGTGTGCCTGTAATCCCAGTTACTCAGGAGATTGAGGGAGGAGAAT
TGCTTGAACCCATGAGGTGGAGGTTGCAGTGAGCTGAGATCACATCACTGTACTCCTCCAGCCTGGATGACAGAGCGAGACTCCATCTCAAAAAACAAAA
AAAAAAGAACTTGCATTGGACATTGAATGAATATGCTAGAATCATCTTTTATTGTAAAATAGTTGAGGGGGAACCTGTGATTGTCTAAGAAACTTTATTG
TTTTCTTCTGTAGTATTTTTATATGAAACAAAATCCGTATCAATTACAACTTTAATAAGTGATTTTCCAACCTACATGATAACTTTATTCCTTGTGCTGG
AATAAACTGTCTCTTGCCTCTTCCTTCCTTTCTCCTCTGAAGCCTTTAGGAAGTCAGTGATTAACACATGTCCCTAGAGGACCCAAGTGGTGTGGAAAAA
AACCTATGACTTGAGGAGAAAAGCAAGGGTTTTTCACCATGATCTTCCTAAAGACTCTTACCTAATTTCTACTGCGTCCTTTCCCTGTTGGTTTTTATTA
TCATTCTTCCCACTTTCAAAAGAGGGAATGGTTGGCCGGGCGCGGTCTTGTATGTGCTTGGTAGTTGAATATTACATATTAAGAACTTTGGGCTCGGCTC
GGTGGCTCACACCTGTAATCCCAACACTTTGGGAGGCCGAGGAGGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCC
CGTCTCTACTAAAAATACAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00244728

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.