Detailed information on ENST00000589060

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000589060 625 294 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000589060 587 299 UTR3 Trans
TCONS_00184374 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000589060 587 299 UTR3 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000589060 604 302 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000589060 614 305 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000589060 614 305 UTR3 Trans

Sequence

>TCONS_00185519 (1551 nt)
GAGGTTGCTGCAGTTTTTCCGCGATAGTTTGGGGCAGTTCCGCGCGTTGCAGGCCCTTCTGAATTTCCTGGACCTACGCATTGGATCCTCAAAGAACTGG
TGATCGAATTAGGGGAAAAGGGGCCTCGTCGGAGAGTAGAGGTTTGGAGGGGCAAGGGCCGCTGTTTGCGTTCTCGTCCGTGGCACCTTCTTGGGCTTGG
GTCTGTCCTCGCTTCCCGGGGGCATTGGTACTTGGTTGGGTCGCGTCTCACCTGGTTTCAGGGTTTCCGGGGCTCTGAGCTCGCCCACTCCGCCCCCTGC
ACCCCACGCGCGTGGCCACTTCTTCTCGATATAACGTTGGGGTGTTAATCTCCTTGGGTTTCCCGTTACTGTTCTTTAAAATGGGGACTTTAGGGCCATC
CTAATGGAATCGTTTTGGGAACTGGAAGAGGTAACACAAATGAGAGCCTTAAAGCAGTCCCTGTCACTTGGTGACTGGTGGTCTCTTGTTAATTTCCCAC
GAAGGACCGGGTGGGGTCAGAGCTCCAGCTGCAGGGGCCTCGGCCCTTCTCCCTGATCCCTGCAGGACGCTGGATGATCCCGGAAGCCTTCTGACCTCTT
TTTAGGAGAGCGAGGGTTGCGTCCACTTTCATGAAGGGAAAGGAGCATTTAACTTTTATGGGGGACGGCGACGCGGTCAAGGTGTTTCACAGCTTTCTCG
TTCCCCAACCCGACCTTTCCAGAAGAGCTGCAGGGAGGGACTTCTTGGCTTCTGAGGGCAAAGCTCTACGTGAGTGGTCCTTGGCTCTTTGACCGAGATG
CTCACCCCAACCGAGAGTGTATAGGTTGTGTCCTCGGGCATGGGGGTCGATAATAATTAAGTCTTAATTAGTAACTTCATTCTAAGGGCTTTATACAAAT
AAATTTACGCCACACCGTGGCTCTGTGGAGAAGTATTGCTTTTTTCTATTTTAAAAACGAAAGTGAGACACAGAGCGCATAGGCACCCGACTAGTGAGAG
GTGGAGCTGGGGTTGGAACCTAAGCAGTCTGGGTCAGAGCCTGATTTGATCTTCTCTTGGGATACGTTGTCACTGAGGCAGAGGAACTAGTTGGACTTAG
GTGGGGAAAGCAAGACTTAGGGGCTTGAAATTTTCTGAGTTTCTAAAAATGTTGTCAACTATTTTGTTTCAATCATTACAAATATTTTGTATTCTTATAG
AACCATGTCATTGTACAGCATTCTATTTTTCTTTATTAAGAACAAAATGGGCCTGGCGCGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGTCCAG
GCGGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCGCATCTCTACTAAAAAATAATTACAAAAATTAGCTGGGCGTGGT
GGTGGGCGCCTGTAATCCCATCTACTCGGGAGGGTGAGGCAGGAGAATCGTTTGAATCTGGGAGGCGGAGGTTGCAGTGAGCGGAGATCTGCCATTGCAC
TCCAGTCTGGGCGACAGTGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA

Expression



Full and truncated open reading frames discovered in TCONS_00185519

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.