Detailed information on ENST00000590523

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000448214 antisense antisense ENST00000590523 533 284 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000590523 530 275 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000590523 506 281 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000590523 533 284 UTR5 Trans

Sequence

>TCONS_00030165 (2052 nt)
GTAGTCCGGCCGCCCTGTGACTAACGGCTGGAACCGCCTAAGACACCACCCCAGCCAGCATGGCCGGCAGGAGCGCACCGCGCTGTCTCCCTCCAGGGAT
CCGCACCGCCCTACAATCCTGCTTTGTGCTGAGATTGTAGTCCTGCAGGCGTACAACTAACAAGCTGGGTGCAGATAAGAGACTACAGCTCCCCGCATCC
CAAGCAAAGGTCCCTCCTCTACGGAGCCCCTCCACGCGTCCACTGCGGTTCCGCCGTGCCAAGGGGAGCTTGGCTGTTCACGGGCCTCACCTGCTAGCGA
GAAGATAGCTTGGCCGGGCGGCTGATCTCACCTTGTAATTCTGACACTGTGTCTCCCGGGCTTGTCGGCTTCATGACTTGTGCCCAAAGTTTGATTTCTC
GCAGACCAGGAGGACCCATTGGACCCCCGGGCTGGCTGCAGGGCCCACACCTGGGTTAGACCTCGCACAGGGACGCTGCTGCCACTGTAATAAAGCGTGC
CTACACGCTTCTGAAACTGGTGTAGGAACAACCTCAGTTCTGTGAAAGGCGGACGCAGCAGGACAGAATCTCCGTGGACATCTGTCTGGAGGAGCAATTT
TACTGCGACATTTTAAAGAAACAAATTTAATTGATTTCCAAGTTATTTGAGACAGAGTCTCGCTCTGTCACCAGGCTGTACAGTGCCGTGGCCTGTCTCG
GCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTTATGCCTCAGCCTCCCAAGTATCTGGGACTACAGGCATGCGCCACCACGCCCAGCTGATTT
TTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGACCAGGATGGTCTCAATCTCTTGACCTCGTTATCCGGCTGCCTCCTCCTCCCAAAGTGCTGGGA
TTACAGGCGTGAGCCACCATGCCTGGCCACATCTACTTTTTTAAATGTGTCATTATATTTGTGATATTGTCATGATGTTTTCTACTTATATTTTATTCAA
AAATTTTATACTTTAAGTTCTTACCTTTAGGTCTTTGATGCATTTTTATTTGTTTATGGTGTAGGGTAAATGTTCAACTTCATCCTTTTGCTTGTGGATA
TCCATTTTTTCCCAGCACCAATTGTTATAAAGACAGTCCTTTGCCCATTGAACGGTCTTTGTATCCCCATCAAAAATTATTTGACCATATGCTGCTTTAT
ACTGTTCCAGTGTCCATATGTGTGTCTCTTTGCCAGTACCACACTATTTTGGAACTTTGTATTAAGCTTTGGAATGAATAAGTGTACATTTTGTAACACT
GGACTTCTTTTTCAAGATAATTTTGACTCATTGGGGTCCCTTGAGATTCCATATGAAATTTAGGTAGGATTTTTCTATTTCTGCAAAATAGAATTTTTTG
CTTTTTTTGTTACTCCCGACGTATTTTATTCTTTTCAGTGCTATTGTAAATGTGCTTGTTTGCTTAGTTTTGTTTTCTAATTATTCATCATTACTGTATA
GAAACACAAGTGATATTTGCATGTTAATTTTGTATGCTGCTACTATGCTGAATTTATTAGTTGTAATACTTTTTGTGTGGATCTGTGAAATCTCTAGAGC
TTTCCACATAAAATTATATTATCTGTAGGCTAGAGTAATTTTACCTCTACATTTCCAATTTGGATAGTTTGTTTCTTTTTAATTCTTAATTTGACTAGAA
CTTCCAACACTATGTGGAATAGAAATAGCAAAAGCAGACACCTTTGCCTTGTTCCTGAGCTTAGAGCAGAAGCTTTTTGTCTTTCACCCTGGAGTACATT
GTTTGATGTGGTTTTTTAATGTGTGGATTTCACAATGGTAGTATTTTAGTTTTAAAATTCCTACTTTTTTGAGTGTTTTCACCCTGAAAAGATTTTGAAT
TTCATAAAATACTTTTCTCTGCATCCATGAGGTGATCAATGTTTCTTTTATTTTGTTAATGTGTACACATTGATCAATTTTTATATGTTAAAAAATTCAT
GTTTTAAGATATCCTTGCATTCTAAGAATAAATTGCACTTGGTCGTGGTGAGA

Expression



Full and truncated open reading frames discovered in TCONS_00030165

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.