Detailed information on ENST00000591226

lncRNA-RNA interactions

Number of interactions: 75

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000591226 625 284 UTR3 Trans
ENST00000301178 AXL receptor tyrosine kinase protein coding ENST00000591226 600 292 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000591226 565 287 noncoding Trans
ENST00000413800 galactose-3-O-sulfotransferase 4 protein coding ENST00000591226 518 303 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000591226 661 299 UTR3 Trans
ENST00000450928 antisense antisense ENST00000591226 559 302 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000591226 589 312 CDS_UTR Trans
ENST00000517408 antisense antisense ENST00000591226 598 296 noncoding Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000591226 550 304 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000591226 568 305 CDS_UTR Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000591226 650 307 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000591226 630 296 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000591226 649 291 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000591226 649 291 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000591226 702 286 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000591226 622 305 UTR3 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000591226 600 301 UTR5 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000591226 615 294 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000591226 640 308 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000591226 640 308 UTR3 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000591226 615 297 UTR5 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000591226 612 300 UTR5 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000591226 625 284 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000591226 625 284 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000591226 625 284 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000591226 617 274 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000591226 629 303 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000591226 629 303 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000591226 629 303 UTR3 Trans
TCONS_00098745 transmembrane protein 170A novel protein coding ENST00000591226 605 293 UTR3 Trans
TCONS_00102930 suppressor of cytokine signaling 7 novel protein coding ENST00000591226 611 296 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000591226 650 307 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000591226 583 302 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000591226 618 300 UTR3 Trans
TCONS_00114623 glutamine rich 2 novel protein coding ENST00000591226 632 306 UTR5 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-associated protein 1 novel protein coding ENST00000591226 632 306 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000591226 624 298 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000591226 661 293 UTR3 Trans
TCONS_00125532 AXL receptor tyrosine kinase novel protein coding ENST00000591226 600 292 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000591226 612 293 noncoding Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000591226 635 295 UTR5 Trans
TCONS_00142174 LY6/PLAUR domain containing 6B novel protein coding ENST00000591226 620 299 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000591226 641 304 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000591226 608 300 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000591226 641 304 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000591226 641 304 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000591226 608 300 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000591226 608 300 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000591226 654 301 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000591226 654 301 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding ENST00000591226 613 296 UTR5 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding ENST00000591226 611 299 UTR5 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000591226 600 304 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000591226 651 298 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000591226 646 299 UTR3 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000591226 605 297 UTR5 Trans
TCONS_00163485 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) novel protein coding ENST00000591226 612 288 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000591226 628 292 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000591226 628 292 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000591226 614 299 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000591226 643 292 UTR5 Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000591226 651 300 UTR5 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding ENST00000591226 647 300 UTR3 Trans
TCONS_00213775 LYR motif containing 4 novel noncoding ENST00000591226 610 300 noncoding Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding ENST00000591226 628 305 noncoding Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000591226 611 295 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000591226 620 301 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000591226 624 295 UTR5 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000591226 642 288 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000591226 605 301 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000591226 795 636 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000591226 655 295 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000591226 602 286 UTR3 Trans
TCONS_00246881 cyclin-dependent kinase inhibitor 2A novel protein coding ENST00000591226 644 302 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000591226 609 309 UTR3 Trans

Sequence

>TCONS_00247058 (2671 nt)
TATGAGGCATTTTGCTTTCCCCCAGCATTTTAATGAGTCTTGGCCTTGTCCCTTATCAGCCATCACTTACTGCAAACTAAGTTCTCTCTCGTGCTCTGTC
ACGCATAGCTCTAAATGGCGTCTTTTTTCTCTCTCTCTTTCTTTTTTAATTTAAATTGTTTCATCAGCTCAGTTACTTAATAACATGCCTGTAGAATGGC
TTAAATTTCGCATTTACCTGGGGTTTGTCTCCGTTCTCCTGGATTCATAGACAGTTACACAATTATGTGTATAATTTAAACAGCCATTCCCAGAAGCTCC
GAAGGAAAGATGGGTTACAGGATTTTAGATTTAACTATCAAAGGCTCAGGGGCTAATTAACTAGCACTTGGGTGGAAATTTATATTAAGTCACACATATC
TAGGACTGAAATCTTCATGTAGCAGCACGTCATAGGTTCTGAAGTATTTCTCCTTTATTCCTCATCATAACCCCCACACCACGCATTGATATCGTTACCC
CCATTTGACAGACGGGGAAAACAGACCTAGGAAGGTTAGATGCTTACTTAAGTGATACAACTGGAGCTTAAGTTCAGGTATTCTGACTCAAGGGTTACCA
GAGTTCACAAGGAAAAATACAGGACACCAACTTAAATCTGAGTTTCAGATAAGCAATGAATAATTTTTTAATCATAAGTATATCTCTTGCATAAGTACAT
CTCATGCAACATTTGGGATATACTTACACTAAAATATTATTTGTGGTTTATCTGAAATTCAATTTAACTGGGCGCCCTGCATTTTATCTTACAACTGTGA
CTCCCAAATTTGGTGCTTGTTCCTTAGTATTCTGTGATGTTCTGCTGTAATTAAAAATACAAAGTACTGGACAGGCATGGTGGCTATAACCCACCTGTAT
TCCCAGCACTTTGGGAGGCTGAGCAGATGGGTTCCTTGAGCCCAGGAGCTCAAGACCAGCCTGGGTAACATGGTGAGACCCTGTCTCTAGAAAAAATGCA
AAAATTGGCCAGGTGGTGGCATGCACCTGCAGTCCCAGCTATGCGGGAGGCTGAGGTGGGAGGATCACCTGAGCCCAGGGAGGTCAAGGCTACGGTGATT
CGTGATTACGCCACTGCACTTCAGCCTGGACAACAGAGTGAGACCCTGTCTCAAAAAAAAAGTACTTTCTCTCTTGTGACTTTCACCCTGGCAGTTTCAG
GTTTAGAAATCTTTGGGGGGGTGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTAGGAGGCCAAGGTGGGTGGATCACTTGAGGTCAAGAGCT
CGAGACCAGCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGTGGTGGTGGCACGCGTCTGTAATCCCAGCTACTCGGG
AGGCTGAGGCAGGAGAATTGCTTGAGCCTGGCAGGTGAAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAATGAGACCCTG
TCTCAAGAAGAAGAAAAAAAAACAAATCTTTTTTTTTCTTTCATTTAACAAAGACGCTTATTAATTTATCTTTCCCCATACTCTTAATCCTCACCAGAGA
AACTTGCCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAACTTAACTGTATATAAGCAAAACAGAAGAGTCTTGT
TCCAACAGAAACTCTGGAGCTCCGTGGGTCTTTCTCTTCTCTTGTAAGAAGTTCCTTTTGTTATTGCCATCTTCGCTTTGCTGGAAATGTCAAGCAAATT
ATGAATACATGACCAAATATTTTGTATCGGAGAAGCTTTGAGCACCAGTTAAATCTCATTCCTTCCCTTTTTTTTTCAAATGGCACCAGCTTTTTCAGCT
CTCTTATTTTTTCCTTAAGTAGCATTTATTCCTAAGGTAGGCAGGGTATTTCCTAGTAAGCATACTTTCTTAAGACGGAGGCCATTTGGTTCCTGGGAGA
ATAGGCAGCCCCACACTTTGAAGAATACAGACCCCAGTATCTAGTCGTGGATATAATTAAAACGCTGAAGACCATAACCTTTTGGGTCAACTGTTGGTCA
AACTATAGGAGAGACCAGGGACCATCACATGGGTAGGGATTTTCCATCCAGAGCCAATAAAAGGACTGGTGGGGGCCGGGGGTGGCTATTGTGGGAAGTC
ATAACCCACAGATAGATCAACCTAAGAATCCTGGCCCTTCTCCACTCTCCACCATGCAGGACAAACATCTTCTCAAGCAGTCAACGTAGAATGCTTGGGA
AATAGTCATAATTACCCACATATAGTAATTAATAGATGGTAATTAATTGATCCTTGATGTGATGTTCTTTTGCATATTTCCTTCATTCTAAAGTTGTTCC
CTGGCCGGGAGCGTTGGCTTTCGCCTGTAATCCCAACACTTTGGGAGGCCAGGACAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCCAGCCAACATGG
CGAAACCATGTCTCTACTAAAAATACAAAAATTATGGTGACGCCTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATCGCTTGAACCCAGG
AAGTGGAGACTGCAGTGAGCCGATATCGCACCACAGCGCTCCAGCCTGGTCGACAGAGTGAGACTCCATCTC

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.