Detailed information on ENST00000592022

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000592022 513 294 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000592022 539 299 CDS_UTR Trans
ENST00000583694 FYVE, RhoGEF and PH domain containing 4 protein coding ENST00000592022 518 293 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000592022 529 299 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000592022 511 298 UTR3 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000592022 571 297 UTR3 Trans

Sequence

>TCONS_00140000 (1267 nt)
AGGCTTAATACTTAGAAAGTGCTAGAGCAGCCTCTATTAGGGGATCTCTTCTCTGATTGTACTCCACTTGCTGTAACACCAAAGGATGCAGAACCAGGTT
CTGTAGCAGAAATTGCTGGTGTCTGTGGCAGGGGAGGGCACCTGAGGACAGGGAAGAAGAAACATATTTTTATCTTTATGGAGCAGCACATTGTTCCCAA
ATACCTTCTGCTTTAAGGGACAGAAATGGATGGACTTTTTCTGTCTTTTCTGCCAGTTGATGTCATGCTTGCAGGTAAACATGTGGTACTGACACCCTTA
AAGGCATATTCTCAAGAGGCAGGTAAAAAACCAATTCCAAAAAAGTATTGCAACAAAAGGAAGCACCAAATAACTATAATATCTTTATGGCTTGCAAAAA
TATAGGCAGAAAAGGGCTTTCTTTTCTAGGGAAGAGCAAACAAGATTAGAAAGGAGGTGGGAGAGGAACAGCAAATGGAGGGTGAAAAAGTCAGATTTTA
GATCAGAGAATGGCTTACCCTGAAATCAGCATGTTCTTAGGAGGGACATAAAATGGGGTTGTATGTTGACTCAGACTGAGGGTAGCTTGAATTTCAGGAG
CCTGAGAGAAGATAAACTTAAGTAAAATTTGATTAAGAAATATTTTATTTTAGGCTGGGTGTGGTGGCTCAAGTCTGCAATCCCAGCACTTTGGGAGGCT
GAGGCAGGCGGATCACCAGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTACTAAAAATACAAAAATTAGCTGGGCGTTGTGG
CAGGTGCCTGTAATCCCAGATACTTGGGAGGCTGAGGTAGGAAAATTGCTTGAGCCCTGGAGGTGAAAGCTGAAGTGAGCCGAGATGGCCCCACTACACT
CCAGCCTGGGTGACAGAGTGACACTCCATCTCAAAAAAAAAAAAAATCATAATTGATTTTGACTGCTGAAGGCAAATTCAGCTGGTTTTTTGTTTTTTTT
TTAATGAGAAAAAGGAGAAAATGTGCAGAGTGTATGTCTGGCTGTGTGATAGGCAAGAAAAGGGAGCATCATCTTAATCATAACGGGAAGAGTGTTTCTT
TCCATAAACTGTTCCTGAAGCACACAAAGGAAGGAGAATTTTATTAATCACAAATATTTTTCATAATTATCTATGTGTTTCATCTTTCCTCATCTCTTTT
CTTTGTTCTATGCATTTCTTCCACTTGGCTTTTCCTGGGCTGCATCTTATATATTAAACCAGTAAGCA

Expression



Full and truncated open reading frames discovered in TCONS_00140000

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.