Detailed information on ENST00000592360

lncRNA-RNA interactions

Number of interactions: 46

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000338758 parvin, beta protein coding ENST00000592360 791 579 UTR3 Trans
ENST00000569455 cadherin 13 processed transcript ENST00000592360 602 292 noncoding Trans
ENST00000606818 antisense antisense ENST00000592360 509 275 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000592360 547 282 UTR3 Trans
TCONS_00026285 cytochrome P450, family 26, subfamily A, polypeptide 1 novel protein coding ENST00000592360 702 592 UTR3 Trans
TCONS_00039637 Cbl proto-oncogene, E3 ubiquitin protein ligase novel protein coding ENST00000592360 610 592 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding ENST00000592360 869 449 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding ENST00000592360 869 449 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000592360 638 286 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000592360 649 279 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 628 286 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 635 280 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 635 280 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 628 286 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 635 280 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 635 280 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 579 279 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 628 286 UTR3 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 635 280 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 628 286 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 628 286 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 635 280 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 628 286 UTR3 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000592360 635 280 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000592360 630 283 UTR5 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding ENST00000592360 606 268 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000592360 667 285 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000592360 740 549 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000592360 603 279 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000592360 603 279 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000592360 603 279 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000592360 635 279 UTR3 Trans
TCONS_00168418 dual specificity phosphatase 18 novel protein coding ENST00000592360 604 279 UTR5 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000592360 618 285 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000592360 618 285 UTR5 Trans
TCONS_00173730 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000592360 618 285 UTR5 Trans
TCONS_00175515 transient receptor potential cation channel, subfamily C, member 1 novel protein coding ENST00000592360 616 279 UTR5 Trans
TCONS_00175724 TSC22 domain family, member 2 novel protein coding ENST00000592360 818 591 UTR3 Trans
TCONS_00187460 spermatogenesis associated 18 novel protein coding ENST00000592360 641 278 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000592360 614 286 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000592360 633 278 UTR5 Trans
TCONS_00199451 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 novel protein coding ENST00000592360 632 278 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000592360 568 291 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000592360 622 285 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000592360 638 285 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000592360 1024 589 UTR5 Trans

Sequence

>TCONS_00252827 (2246 nt)
CTTATTTATAAGGGATGATGTTTTAATTATATCCATGTACTAATGTGCACCAGTAGGTACACACTTACTTACTAATGTTTCCTAAGATTCAGCCATTGAA
AATTAACTTTCCATTTGATTGATTTACTTAATTCAGAATGTGGTAATATCCTGACCAAGATTTTCAATGTTTTATGACCATGAGCCATAGTAAGAAATAC
ATCTTTCATCATCACCAGGATGAAAATATTTTGTGCATGTAGATGTGTATGAGTACCTTTAGTAGGCATTTCATATAATGGCACCTTTCCTGTTTGTCAC
GATGCTATGATAATTTCTATTCTGGTTCTTTTTCCTAAATGCTTTTTAGAAGGTTTCAGATTTATTTTACAGCTCACTAAGAGTCTGTAGTGTTTATTTT
GAAAATGGGTATAAAGGTCTGTTTCTTTACATCATATTTTTTCTGCTATCTGTTTTCAATGAGACAGTCCAATAACTTCACATGGAACCAATCAGGGCAT
GACCCCTTAGGCGTTCTTTTCATCCCAGGTGATCTTACCAACTTTCATTGTCTCATCAGGATCATCCCCCTTTGTGTATTTCTGTCAGGTCCAGCCTTTC
AGATTCCCATCAAAACTGAAGGTTTCTGATCCTTTTCTATTTCAGGTAACCAAGTTATTGTTCATATCAGTACAGACAAATGAGATTATACATGTTCTGC
AAAAATTCTTGTACAGGAATACTCTGAAAATGTAGACATAAATACTCCTAGGTATTTGATATTTAGTATTGTGAAGAGCTTAACCAATTGCAAAGTTTAA
AGTGACAGCTCACAGAAGACTGCTGTCACTGCATACCAATGACAAATTCAGTGGTTTCCCCAAATTATTTTCATGTTCCATATTCTTAAAATTATGGGTT
TTTATAGGGGAAAGATGCATATTACAATTAGGAGAAAAATCAAGTAAGACAGAGTCCAGGGAAGTATCAAATGAGAACTTTTTATTGTACTCTCCCCATG
AAATCAGGATGCATTACATCCCCAAGATTAAGGTGTGACATTAGACGGGAGGAGAGCCTATCAGGGAAGCTTTCCTGAGCCCTGGTATTCAGAGTAATCG
TTGTCTGTTAATTACATAGCCATTATTGGTTGATTTCTTTCCCGTATGAGTAGTCTCAGTCTCCTGGTTGACTGATTCCACATGACCTAAAGCCTCACCA
TAAATCACATTGTTGGTCTTTCTCACATAGTGAGCACCACATTCTCCTCATAGGTGTGGCCACCCATAATCCTAAATCGTAGAATTACACCGTCCAGAGT
GACTTACTAGACCTACTACCTCCAGGCAAACAAAGACACTCTCCTAGGGCATGACATTTTAAGGACTGAGAGATTGCCTCTCAGATGCTGAGGACATCAC
CCAGGCCTCTTTGTGACTTAGGATAATTTCTTTACTTCATAAGGATATACAATACAAACTAAAATATACAAAGTTTTGACGATGTTATGGCTTCTCCTTA
AAGTTCACATTTGATTCATATTTCACTGTTTACATAATTTATTAGTTACATAATTTACCATGCAAGGTTTTATTTCTACCAAGTATTTCACATATGACAC
GTGGTGTGGTTCTGAATTGGTCTCATGCAAACCAGAGTCCATAGTGTACCTGGAAAACACATTGGCTGGGCACAGTGGCTCAAGCCTGTAATCCCAGCAC
TTTGGGAGGCCAAAATGGGAGTATCACTTGTGGCCAGGAGTTCAAGACCAGCCTTGGCAACATAGCAAGACCTTGTCTCTACAAAAAGTGTAAAAATTAG
CTAGTTATGGTGGTATGTGCCTGTAGTCCTAGCTACTCAGGAGGCAGAGGTGGGAGGATCACTTGAGCCCAGGAGGTCAAGGCTGCAGCGAGCCATGATT
GTGTCCCTGCACTCCAGCCTGGGTGACAGAGGGAGACACTCTCTTTAAAAAAGGAAAATACAGGGCTGGGCGCAGTGGCTTACACCTGTAATCCCAGCAC
TTTGGGAGGCTGAGGAGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAAACCCATCTGTACTAAGAATACAAAAAATTAGC
TGGGCGTGGTGGCGGGCGCCTATAGTCCCAGCTACTGAGGAGGCTGAGGCGGGAGAATGGTGTGAACAACCCAGGAGGTGGAGCTTGCAGTGAGCGGAGA
TCACGCCACTGCACTCCAGCCTGGGGGACAGAGCGAGACTCCATCTC

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.