Detailed information on ENST00000592474

lncRNA-RNA interactions

Number of interactions: 54

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000592474 525 252 UTR3 Trans
ENST00000312828 ring finger protein 152 protein coding ENST00000592474 601 287 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000592474 689 290 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000592474 567 287 noncoding Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000592474 621 288 noncoding Trans
ENST00000561387 ubiquitin associated protein 1-like retained intron ENST00000592474 602 289 noncoding Trans
ENST00000620788 pleckstrin homology-like domain, family B, member 1 retained intron ENST00000592474 636 290 noncoding Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000592474 616 289 UTR5 Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000592474 621 288 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000592474 663 265 UTR3 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000592474 646 290 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000592474 689 290 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000592474 689 290 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000592474 689 290 UTR3 Trans
TCONS_00099311 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000592474 619 287 UTR5 Trans
TCONS_00099312 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000592474 619 287 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000592474 637 266 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000592474 629 290 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000592474 637 266 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000592474 629 290 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000592474 683 289 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000592474 672 291 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000592474 601 287 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000592474 606 265 noncoding Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000592474 628 292 UTR5 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000592474 662 288 UTR3 Trans
TCONS_00165713 LIM domain kinase 2 novel protein coding ENST00000592474 611 290 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000592474 547 272 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000592474 547 272 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000592474 657 284 noncoding Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000592474 618 292 UTR5 Trans
TCONS_00174508 calcium-sensing receptor novel protein coding ENST00000592474 632 289 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000592474 624 288 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000592474 601 272 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000592474 647 291 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000592474 604 287 UTR5 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000592474 600 290 UTR3 Trans
TCONS_00216783 KH homology domain containing 1 novel noncoding ENST00000592474 613 289 noncoding Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000592474 538 291 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000592474 538 291 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000592474 668 293 UTR3 Trans
TCONS_00244030 WNK lysine deficient protein kinase 2 novel protein coding ENST00000592474 673 314 UTR3 Trans
TCONS_00244038 WNK lysine deficient protein kinase 2 novel protein coding ENST00000592474 673 314 UTR3 Trans
TCONS_00244055 WNK lysine deficient protein kinase 2 novel protein coding ENST00000592474 673 314 UTR3 Trans
TCONS_00244728 chromosome 9 open reading frame 91 novel protein coding ENST00000592474 650 288 UTR5 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000592474 614 290 UTR5 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000592474 577 291 UTR3 Trans

Sequence

>TCONS_00251973 (1897 nt)
CTTGATAGGAAAAAAGTGTAAGGCTGGGTGCGGTGGCTCATGCCTATAATCCTAGCACTTTGGGAGGCTGAGGTAGGAGGATTGTTTGCTTCCAGTTTGA
AATGAGCCGGGGCAACATAGCAAGATCCCCTCTGAGAAAAAAAAGTGTAAAACATCTCATTAATTTTTATATCAGGTTGGGCGTGGTGGCTCAAGCTTGT
AATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACGTGGAGAAACCCCATCTCTACTAAAAAT
ACAAAACTCAGCTGGGTGTGGTGGCGCATGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAG
CCAAGATCGCGTCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAATACATACATACATACATACATACATACATTTTTATATCAG
TTACATGTTGAAATTATAATATTTTGGGAATTGCATAAAATAAAATGTATTAATTTCATCTGTTTTTAATGTGGCTACTAGAAAATTCAAAGTAACATGT
ATGGCATGCCTTCTATTTCTTTTGGCCAATGCTGCTGTTTCTGAGAGATTGCAGGTTCATTGAGGGGGAATTTGCATGGTTTGTTTGTTTTTTGTCTGTA
TAGTGGTTTTGCCACCATTTCCAGGGAATTAGGTTGTGATTACATTTCTCTAGTGATACATGAATGACTGAGATCTTGTAATTTGTTTTGTTTTGCTAGT
GATGATGGCCAAAGAGAAGCCACCGATAACTGTAGTTGGAGATGTTGGAGGCCGCATCGCAATCATCGTGGTATGGTTATATGTCATCCATGTGCAGAGG
TGGCACTCCTGGCTCTTGGTCAGTAGGTTGTCCACTCTGGGACTGTATTTCTAGGAACGATGATCCGAATGGATCCATGTATCCTTTCTCACCCAAACTC
CCTTGTGCCAAGTGGCAGAAACCTGTATCCAGGTGAACATACATTAAAGTATAACCTACAGATAGGAAATGAGCACAGTACTCCCGTGAGAAAATTCAGC
ACCTTCACCTTCATCATGTGGATTCTAGGTTCTTTAAACCAGCTCACCTAATCATGCTTGAGCGTTAGGGCCGAAAGATGAACTGAAGATGAGCTGTTCC
GTTTTCACAAGTAAGAATGGGTGTCCCCGTGCAGACTCGTTCTGCATGTTGACATACTTTTTTTCCCAGCTCTAAATATCTGCTGGCTAGTGGGTCATGA
GTCCTTTGCAGTAGCACACTTTATTTCAGTTTTCTTCTCATGTCACAGTCTATTTGAAAAAAAAATAAATGGAACGCTGGCTATGTGGGATTCACCAGAA
ACGTGAGACAGGAAAATGAGTGTTGGCAATCCTCAGCTCCAGCCGTAATGTCACAGGTGCTTGACTGCGCCCGCCTCTGACAGACACACAAGGTACTGTC
AGGTGCTTCTGTTGCCATTTCTGGATGCTCGTTCTTTGACCCAGGCACACAGCTCTGATTTTCCATCAGAAATCCTCTGAAACTGAGTGCAGAAGAGAGT
AGAGTGGTGTGTGCATTGACAGTATGGGCTAGAGGGTGTTTCTTTCCTACCAACTCACTCTGTTCTCCTCCCAGGATGACATTATTGACGATGTGGAGAG
TTTTGTTGCTGCCGCGGAGATCCTGAAAGAGAGAGGCGCCTATAAGATCTATGTTATGGCCACCCACGGCATCCTGTCTGCAGAGGCCCCTCGCCTGATT
GAGGAGTCCTCCGTAGACGAGGTCAGGCTGCTTCTAAATCTTGAGCCAAGATTTACTGCTGTGTTTTCTGGGAATAATAAAATGATTCAGTCAATACT

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.