| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| TCONS_00148698 | WD repeat containing planar cell polarit... | novel noncoding | ENST00000592775 | 727 | 557 | noncoding | Trans |
>ENST00000592775 (698 nt)
CCCTGTCGGGTTTTACCTCCCCCCGGGAGAGCTCAGCCCTGGATCCCGGCGGGCGGCGGAGCCTCTCTGGAGCCCGGACGGGACAGCCCACCAGGGTCTG<br />CTTCTGTGAGGGGCCGAGGCGTCATTCCGCGAAGGCTCTTCATTCGATGTACAAAAACCACAAGATTATCTAAATAGATGCAGAAAAGGCCTTCGATAAA<br />AATCCTCATTCCTTCATGTTAAAAACTCTCAATAAACTAGGTATTGAAGGAACATACCTCAAAATAATAAGAGCCATTTATGACAAACTCACAGCCAGTG<br />TCCTTACTGAATGGGCAAAAGCTGAAAGCATTCCCCTTGAAAACCAGCACAAGACAAGTTTGCCCTCTCTCCCAACCCCTATTCAATATAGTATTGGAAG<br />TTATGGCCACGGCAATCGGGCAAGAGAAAAAAATGAAGAGTATTTAAATGGGAAAAGAGGAAGTCAAACTATCTTTTTTTGCAGGTGACATAATCCTATA<br />TCTAGAAAACCCATTGTCTCAACCCAAAAGCTTCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATAAAAAATCAAAGTGCAAAAATTGCTATACA<br />CCAACAACAGGCAAGCCAAGAGCCAAATCATGAATGAGCTTTGATTCACAATTGCTACAAAAAGAACAAAATACCTAGGAATACAGCTAACAAGGGAA
In silico ORF/peptide predictions
>peptide 1 (90 aa)
MLKTLNKLGIEGTYLKIIRAIYDKLTASVLTEWAKAESIPLENQHKTSLPSLPTPIQYSIGSYGHGNRAREKNEEYLNGKRGSQTIFFCR
>peptide 2 (58 aa)
PCRVLPPPGRAQPWIPAGGGASLEPGRDSPPGSASVRGRGVIPRRLFIRCTKTTRLSK
>peptide 3 (56 aa)
LSGFTSPRESSALDPGGRRSLSGARTGQPTRVCFCEGPRRHSAKALHSMYKNHKII
>peptide 4 (55 aa)
MTNSQPVSLLNGQKLKAFPLKTSTRQVCPLSQPLFNIVLEVMATAIGQEKKMKSI
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.