Detailed information on ENST00000592995

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding ENST00000592995 523 292 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich ... protein coding ENST00000592995 521 284 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000592995 534 294 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000592995 614 278 UTR3 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000592995 610 272 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000592995 638 286 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000592995 617 287 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000592995 617 287 UTR5 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000592995 602 282 UTR3 Trans

Sequence

>ENST00000592995 (3558 nt)
GAAACTTCATGGAGAAGTACTGCCGGCTCTTGGACTTTTCTTCCAGAAGTGGCACATTTCACTTCTCATATTTTAATTGTGGAAAGAAATCACATGGCCA<br />CACTTGTCTTTGTTTGTTTGTTTGTCTGTTTGTTTGAGACAGCGTCTCACTCCATCACCAAGGTCTGGAGTGCAGTGGCATGATCACGGCTCACTGCAGC<br />CTCCACCTCAGCTCTACCAAGTAGCTGGAACTACAGGTGCACATCACCACGCCCAGCTAATTTTTTTGATTTTTGATAGAGACAAAGTCTCACTATGTTA<br />TAACCCAGGCTGGTTTCAAACTTCTGAGCTTGGCGATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCGGCCACAA<br />GATTTATATTTCTATATGCAAATTATATTTAGAGTTTTTAGAAAATGCCTAGCTATAATCATGGATCAAAATAACAACTGAGAGCTGTGCACAGTGGCAC<br />ATCCCTGTAGCCAGGAGTTCAAGTCCAGCCTGGGCAACATAAAACCTTGTCTCTTAAGAAAAGAATTAATAGGAAAACTTGAAATTCTATGCATTTAAAA<br />ATTATTAAATGAAAATAACAAAAGATTGTTGTCAGCCACTCCAGGACTGGGATATAAGGACCTTAGAAAATGCTGTGGTAAATTCTGCCCCCATTGTTTT<br />ATTTTAATAATAGCGGAAAATGGGGGTATACCAGCTTTGTAAGGTAACTTTGTTTTGACAGATTTGTACTAGGACTGACTGTCAAAATTTTAAACTTTAT<br />AATTTTCCCAGCTTATATACAGATCTGTTTATAATAGAATTTTTAAGTACTTGGAAGGAAAGAAATTACAAATAGAACCTTTGTATTTATGTTTGGAGGG<br />TTTTTTTTCTTATTAACTCTTATAGCCAGAATATATAAACTACACGTATTTTAGCACACTAATGAACTGTTTGAGAGTTAACCATTTTTCACTTTATCTT<br />TAGGCTTGTGTAGTAAAACGTGAATTTAAGAAGGCAGAACAGTTAATTAAACATGCAGTGTATTTGGCACGGTAGGTGATTATTATTAAAAATATCCTTT<br />TAAATTGTCTCTATACTTTATATCCTAATAATTTTGTGTCTTTTTATAGGGATCATTTTGGATCCAAACACCCAAAATATTCTGATACACTGCTAGATTA<br />TGGGTTCTACTTACTCAATGTAGATAATATCTGTCAGTCTGTTGCAATTTATCAGGTATGTTAATGGTTACCCTTTTTTTCTTTCAACCTGTATTGACTT<br />GCTGACCTGTATTTGTTTGTGGTGTATAAACCACTCTAAAAATGACTTTTTGACAACTACCCCGCCCACCAATATAGGTTGCATCATTATTTTATTAAGT<br />ATTACCTAGAAGGTGTAAAAGTTAATGCTTTGGGAATTAAAGAAAATCATTCAGGAAAGGAATTATTGGGTTGTGAGCTCATATGTGGGAGTAGTTTTCC<br />ATTTTTTATTTACCCATGTAATGGCTTGTCTTTGTTGTTGATTTAGCAAATGTCACTAAAACTGCCTTTGTAGTAACAAAGATGGCTGATAATTATTTTA<br />GGTCTTTCTTACTCATTCTCAGGTAAATGATGTATTATGCCATTGCTGTAGACAAGGCATACTTGACTTCAAGGTTCACTTTTTTTTTTTGAGACACAGT<br />TTTGATCTGTCGCCCAGGCTGGAGTGCAATGGCGCAATCTCAGCTCACTGCAACCTCTGCCTCCCAAGTTCAAGCAATTCTCGTGCCTCGGCCTCCTGAG<br />TATCTGGGATTACAGGCCCGTGCCACAATGCCCGGCTAATTTTTGTATTTTTAGTAGAGAGGCGGTTTCAGCATGTTGCCCAGGCTAGTCTTGAACTACT<br />GACCTCAGGTGATCCACCCACCTTTGCCTCCCAGAAGTACTAGGATTACAGGTGTGAGCCACCGCGCCTGGCCTAAGGTTCACTTTTGAAGAAGGAAACA<br />GAGCAAAACATTCCCAATGTCTTGATTCTCAAGACATAGGAATGATTATTATTATTATTATTATTAAGCCGTGGCCTTTTAAGTCAAACTCGTATCTTCA<br />GAAATTCAGGACTTCTAGGTGACTTTCATGTTCTGTAATTTAAATACAGCAGGACTTTCTGGGCTTCAAAATTTTATGGTGTTAGGCATATAGATATATA<br />TTTAAATTACTAGGATGTTTAATTTAACTAGGTGGTATTTTCTACAGTATTGACAAATATTTTTATGATTCTTTCAGGCAGCCCTTGACATTAGACAGTC<br />AGTGTTTGGTGGCAAAAATATCCACGTAGCAACAGCTCATGAAGATTTGGCCTACTCTTCTTATGTCCACCAGTATAGCTCTGGGAAATTTGACAATGCA<br />CTGTAAGTTCCACATTCCTTTTCTCTGAAGGAGGAAATACTGTTTTTGTTTTATTTTGTTTTTTCCCATTAGGGAACTATTATTACATTAATAATAGTAC<br />TTGATATACTTTATGGATTGAACTTGTCTTCCTGGAGCTTTATCAGAATGCCTAAAATGTTCTTGAAGTCATTTAAAATCATACCAGTTTTCAGGTGCAG<br />AGGCTCCCGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGAAAGATTGCTTGAGCCCAAGAGTTTGAGACCCTGTCTACTCAAAAAATTTTTAAAAC<br />TAGATGGACGTTTTGGTGCATGCCTGTGGTCCCAGCTTCTCTGGAGGCTGAGGCAGGAGAATCGCTTGAGCCCAAGAGGTCAAGGATGCAGCGAAGCATA<br />TTCACACCACTGCATTCCAGCCTGGGCAACAGAGTGAGACCCTGTTTCCAAAAATAAATAAAGTCATACTAATTTATAGGTTATTCATTTAGCCTTTATG<br />TGATTTACTATTGAGACTTGTATATTTTCATGCAGAATATAACTTATGTTTTGAGTATTTCCTTCAATAATTTTTGAGTAATACAGTAGCAAACTTAATA<br />ACCTAAAAACTTCTTGGTGATAACACATAGAAATACTGAATAACAATTGTCTTTTTAAATATATAACTGAGCTTGCAAGAGTGAGGGGGAAATCCCCCAA<br />GGGCCAATAATGGACACTAAAATTTAAAGGATTAAGTATGGCCTGTGGTATAACTGCTCTGGGGTGATGGGAAAGTTTACAGATTTCTGTAACCTTGGTT<br />TAAGAAACAGCCTATAGGAGGCTGGGAGTTAGAACTGAAACCCTCACATGAAGCAAAGTCAAGACTGCAACCCGGCCGGGCGTGGTGGCTCACGCCTGTA<br />ATCTCAGCACTTTGGCGGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACAAGCCTGGCCAAGACGATGAAATGCCATCTCTACTAAAAATA<br />CAAAAATTAGCCGGGCATGGTGGTGGGCACTTGTAATCCCAGCTATTCGGGAGGCTGAGGCAGACAATTGCTTGAACCCAAGAGGTGGAGGTTGCAGTGA<br />GCCGAGATCACGCCACTGCTCTCCAGCCTAGGCAACAGAGTGAGACTCTGTCTCCAAA

Expression



Full and truncated open reading frames discovered in ENST00000592995

In silico ORF/peptide predictions
>peptide 1 (60 aa)
ETSWRSTAGSWTFLPEVAHFTSHILIVERNHMATLVFVCLFVCLFETASHSITKVWSAVA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT055090 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9DAX9|APBP2_MOUSE (Evalue: 5.0E-23)