Detailed information on ENST00000593576

lncRNA-RNA interactions

Number of interactions: 45

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000182527 translocation associated membrane protein 2 protein coding ENST00000593576 520 294 UTR3 Trans
ENST00000280154 programmed cell death 4 (neoplastic transformation inhibitor) protein coding ENST00000593576 595 299 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding ENST00000593576 627 275 UTR3 Trans
ENST00000407780 inducible T-cell co-stimulator ligand protein coding ENST00000593576 610 297 UTR3 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000593576 537 299 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000593576 651 266 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000593576 526 304 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000593576 501 271 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000593576 557 270 UTR3 Trans
TCONS_00008385 nitric oxide synthase 1 (neuronal) adaptor protein novel protein coding ENST00000593576 619 290 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobiotic) novel protein coding ENST00000593576 612 300 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000593576 639 308 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000593576 639 308 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000593576 615 283 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000593576 615 278 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000593576 552 295 UTR3 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000593576 681 307 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000593576 681 307 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000593576 627 270 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000593576 627 270 UTR3 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000593576 524 240 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000593576 627 270 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000593576 646 291 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000593576 632 270 UTR3 Trans
TCONS_00116334 low density lipoprotein receptor class A domain containing 4 novel protein coding ENST00000593576 604 272 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000593576 620 304 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000593576 685 307 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000593576 678 274 UTR3 Trans
TCONS_00163891 inducible T-cell co-stimulator ligand novel protein coding ENST00000593576 610 297 UTR3 Trans
TCONS_00175724 TSC22 domain family, member 2 novel protein coding ENST00000593576 613 304 UTR3 Trans
TCONS_00187165 NEDD4 binding protein 2 novel protein coding ENST00000593576 614 291 UTR3 Trans
TCONS_00189321 transcribed_unprocessed_pseudogene novel protein coding ENST00000593576 604 295 UTR5 Trans
TCONS_00189329 transcribed_unprocessed_pseudogene novel protein coding ENST00000593576 604 295 UTR5 Trans
TCONS_00189333 transcribed_unprocessed_pseudogene novel protein coding ENST00000593576 604 295 UTR5 Trans
TCONS_00189336 transcribed_unprocessed_pseudogene novel protein coding ENST00000593576 604 295 UTR5 Trans
TCONS_00189341 transcribed_unprocessed_pseudogene novel protein coding ENST00000593576 604 295 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000593576 647 302 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000593576 504 294 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000593576 626 296 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding ENST00000593576 626 296 noncoding Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000593576 620 303 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000593576 620 303 UTR3 Trans
TCONS_00240832 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 novel protein coding ENST00000593576 632 280 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000593576 617 294 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000593576 617 294 UTR5 Trans

Sequence

>TCONS_00243482 (2886 nt)
CACCACACCTGGCTAATTTTTGTATTTCTATTAGAGATAGGGTTTCCCAATGTTGGTGAGGCTGATCTCAAACTCTTGACCTCAGGTGATGCACCTGCCT
CAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTGACTGCGCCTGGCCTGTAAAATATATCTTGACCTAGATCACAGATGCAATGATTACTCTCATACC
TCACAGTATTTAATAGGAGAGATGCTCTCTCTTGCTCTCGCTCTCTTTTTTCTTTTTTTTTTTTTTTGAGACAGTTTTGTTCTTGTTACCCAGGCTGCAG
TGCAATGGCGTGATCTCTGCCCACCACAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCACGTAGCTGAGATTACAGGCATGTGCC
ACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCTATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCTGCCCACCTCG
GCCTTCCAAAGTGCTGGGGTTACAGGCATGAACCACTGTGCCCAGCCCAAGATGCTGTCTCTTAACAGCTAGGCCTAGAGTCATGAATATGATTCTGGGT
CTCCTTGTACAAAGGTCATGAAGAATTGCCACTTTCTTGCATACTGTATAAATCTCTTGTGGTACAGAGAGTGTCATTACAGGGTTCAGCATACAGATGA
GATTGTTTCTCATATACACTCCCCACCAACTGTTAGAATTGTCACCCTCACACATGGACAGAGCCCACTGGTGAGGCCCTGAATCTCACACACACACACA
GTCTACAGTTAAAATTGTGACTGTCATATGTGAACATCTGGCTAGAGTTGAAATAATGACTTATTTCTAAATCCAGTTCATAGGTGAGAATTCTACCTGT
CTAAGCCTAGGTAGGATAGTCAACATGTCCCTAATTGGCTGGGGGACATGTTGACTCTCCTACCTGGGCTTAGGGCCAAACAGTTCATGGAAGGGATGAA
GGCTCTCAGCTCTCATGCACAGATCCAGTTGGTGAGATTGTCACTAGCATACTTAGACCCAACATACTCTGATACCTAGAACTGGGACATGTGCAGGATT
TTTAATTACTGGACCTTCCTGCAGGTGTGATTGTGACATATGTCTTTGTTACACACCTGAGTGGTTTGATGTTCCTGCCTTGGTTCAACCCAAAGTGAAG
ATTGTGATGTGTCACTGGACCCAGCATCTCAGTGATGTGACTCTTCTTTTTGGACACCACAAATTTTGGGTATTGTCAAATATTGCTGGATCCTGTACCC
ATGTTATGTGACTCTCCAACCTATGTCCTGCATGTTGTGCCATATTGCAGCACAATGTGTCACATTAGACATCATTACATATTGCTGGGCTCAACACCCA
AGTGATGTAACATTTTCCTGGGCCTTGACTACAGGGGGCTTTGTGACATAACTGAATGCCCATAACCATGGTAATGTTACTCTTCTCCTGCCTGGTCTCT
GCTCACAGGGAAATTGTGACATACCATTGGCCTAGCATCTTGGTGATGTGACTCTCCTCTTTTTCTCAGGCCCCACATATTTGGGTATTGTGACATACCC
AAATGTGACACTGGGCTCAACACCTAAGGGACGGGAGTTCTCTACCTGGCCCCTTCCTGAAGGGGGCATTGTGACATACTTCTGCACAGGTATGTCACAG
TTATTACCTAGGAGATGTGACTCTCCTCTTTTGCCAGCACCCTGCTTACAGGGAAAATTGTGGCACATTTCTGTGGCCAGCAACCAGGTGATGTGTTTCT
CCTGCTTGGGTCTTTATTACAGAAAAGATGGTTGACATATCACTAGGCCCAGCATCTAGGCGATGTGACTGTCTTCTTCTGCCTGGTCCCTGCTTACAGG
AACATTGTAGCATATTGCTATGCCCAGCACTTTTCTCTTCTTTTAGGTTTTGCCTGCAGGAGACTTTGTGACATTGCTGGGCCCTGCACTGACATTATCT
GACTCTTCTGTCTCTGCCTACTTGGGCCATTGTGACATATTGCTGGGTCCAACATCCAGGTGATGTAACTTTTATGCCTGGGTCCTGGCACCAGAGGACA
TTGTCTTTGCACCACTCACACAGGTGATGTGATTTTCTTCTGTTACCTGGTCTCTGCTCACAGGAAGAATTGTGACCTTGGCCAGGCTCGGTGGCTCACA
CCTGTAATCATAGCACTTTGGGAGGCCGAGGCGAGTGGATACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCCATCTTACTTA
AAACACAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAGTTCCAGCCACCCACGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGTAGGCGGAGATTG
CAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGGGAGACTCCATCTCAAAGAAAAAAAAAGTGACCTTTTGCAGCACATAGCTGATTTG
ACTGCTTTGTGGAGTACACCAAGCAGGTTGTCAAACTGGTGGTCCCTTTACTGAAATTTTATTTCCACAATGGTGTTGGAGGGGCAGCAGCAGAATCCGT
GCCTTTTCTTCTGGAGTGTGTGAGAGTCCGTGGTCCTGAGTATCTCACACAGATGTGGCAATTTATGTGATGTTCTGATTAAGACCATTGGTACAGAAAC
AGATTCAGATGTCCTCAGAAATAATGCATTGTTTAGCAAAGTGCATTGAAGTTATGGGAGATGGATGCCTTAATAATGAACACTTTGAAGAACACCTTTG
CCACATGTCCTCAGGACCTTCTGAGGGCTGTGTCATGGGGCATGGTCACTCATATTTGACTCAATAAATTTCTTCAAATATTTTAAA

Expression



Full and truncated open reading frames discovered in TCONS_00243482

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.