Detailed information on ENST00000594119

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257287 centrosomal protein 135kDa protein coding ENST00000594119 528 317 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase fa... protein coding ENST00000594119 608 301 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (... protein coding ENST00000594119 537 283 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000594119 602 278 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000594119 514 296 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobio... novel protein coding ENST00000594119 587 301 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000594119 658 290 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000594119 624 307 UTR3 Trans

Sequence

>ENST00000594119 (2732 nt)
TTACTGTGTGTTTCTCTACCTACCTCTCATTCTCACCTTCTTTTCCTAGCTTTTTTTTTCTCTTTATTTTTCCCCTAGGATTCTCCTCATTTCAAGCCCT<br />TCTTCCTTCTCCTGCTCTTCCCTCTATTCCTTCTCTTCCACTTGTTCTGCTCCTTTCTCACTTCTTTCACCTCTTATTCTTCTTTCTGCCCAATATTTGT<br />CTCCAATTTTCATATAGTTCTGCCTCTTTCTTCCCCCCGTCTCTGCTGCCCCCTAGCTTCCCCTGTTAAATCCCCTCTTCCCTGCTATATCCACCTGTCC<br />CCTCTCTGGCATCCCCAGATCCCAGTTCTCCCCAGGCTGTGGTTCTCCCTGTGCTCTCCTTATCACTGGCTGCCCCTCTTGCTCTCCCAGCACCATGCTG<br />CTCTGTCTGCCCTGGCTCCAAATCCCTCCTTCTCTCCCCAACTCTCCATCTGAGGAGCCTCCCCTTTTCTGCCCCTCTCCCTATCTTGCTGAACTTTATC<br />TCTCTAGAAACCCAGTTTTTCTCTAAATTTCTCTAGTTGCTTTTCTCCCCCTGCTCCTTTCTCAGCATCTTCATGCACTGTCTCTGCAAATCCCTCATCC<br />ACCATCTACTTTGCCATCTGTTTTGTTTTGTTTTTTGTTTTTTGAGATGGAGTTTTGCTCGTCGCCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCAC<br />CGCAACCTCCGCCTCCCGGGTAAAAGCGATTCTCCTGCCTCAGTCTCCAGAGTAGCTGGGATTACAGGCATTCGCCACCATGCCTGGCTAATTTTGTATT<br />TTTTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGAATTACAG<br />GCGTGAGCCATCGCACCCAGCTGCCGTCTGTTTATGGGTCTCCTTCATTCTTCTTTCCCATTTCACCATTTTTCTATTTCCTCTCCTCCACACATTCATA<br />GGGAGGGGACTGCAGTCAGATCCCCACCTCAAGAGCCCATTTCCTGTGGGATGGAATTTGGGACAAGAGAAACCTTAACGTCCTGAGATAGAAGTCACGT<br />CCCCACACTCGATATCAGGAGAAGGGGAGGCCTGGGGAGCAGAAGGGCCCCCGATCAAGGAGGAAAAAGGCAGGAGAAAGTCAGGAGAGGGGCAGGGTCT<br />GCAGGATCCCAGGACCAGGAAGAGTTCACGGCCTCCCTGGGACTGGGGCTGCGTCGCTGCGCTCCAGGAGCTGACGAGGGAGCGGAGCAGATGGGAAGCT<br />CCCAGGGCGGGAATCAACCTTGCGGTGAGGACTTTAAAAAAGGTGCGGGCCAGTGCAGGGGACACTGAAGGATTTGAGGCAGGAAAACTCCGCGATAAGA<br />GCTGTCTATATGGCCCTGTGGCAGAAGCACGGGGGACACGACCCCATGGAACTGTGTCCATTAAACCTCTTTGTCTTCATAAATTACCCAGTCTCGGGTA<br />TTTCTTTATTAGCAGCGTGAGAACAGACTAATACAGTAAATTGGTAATGGTATAGAGTGGGGTGCTGCTATAAGGATACCTCAAAATGTGGAAGCAAATT<br />TTGAACTGGGTAACAGGCAAAGGCTGGAACAGTTTGGAGGGCTCAAAAGAAGACAGGAAGACGTGGGAAAGTTTGGAGCTTCCTAGAAAATGGTTGTTGA<br />ATGGTTCTGACCAAAAAGTCCAGGCTGAAGGTGGTCTCAGATGGAGATGAGGAACTTTATTGGAACTGGAGCAGAGGTGAGCTGCAGGGGCGGAGCCCTC<br />ATGGAGAACCTCTGCTAGAGCAGTGCAGAAGTAAAATGTGGGGTTGGAGCCCCCACACAGACTACTCACTACTCGCCTAGTGCAGCCGTGAGAAAAGGGC<br />CACCCTCCTATAGACCCCAGAATGGTAGATTCACCGACAGCTTGCACCATGTGCCTGGAAAAGTAGCAGACACAACACCAGCCTGTGAAAGCAGCCAGGA<br />GAGGAGCTGTACCCTGCAAAGTCACAGGGGCAGACATGGGTTCCCTGCAAGACCACTGGAACCAACCTCTTGCATAAGTGTGACCTGGATGTGAGACACG<br />GAGTCAAAAGAGATCATTTTGGAGCTTTGACTGCCCTGCTGGATTTCAGACTGGCATGGGGCCTGTGACCTGTTTTGGCCAATTTCTCCCATTTGCAACG<br />GGCGTTATTTATCCAATACCTGTGCCTCCATTGTACCTAGGAAATAACTAACTTGCTTTTTATTTTACAGGCTCATAAACAGAAGAGACTTGCTTGTCTC<br />AGATGAAACTTTGGACTGTGGACTTTTGAGTTAATGCTGAAATAAGACTTTGGGGGACTGTTGGGGAGGCATGATTGGTTTTGAAATGTGAGGACATGAG<br />ATTTGGGAGGGACCAGGGGCAAAATGATATGGTTTGGCTGTGTCCCCACCAAATCTCATCTTGAATTGCAGCTCCCATGATCCCCACATGTGGGAGGGAC<br />CCGGGGGGAGGTAACTGAATCATGGGGGTGGGATTTTCCCATGCTGTTCTCATGATAGTGAATAAATCTCATGAGATCTTATGGTTTTATAAAGGGCAGT<br />TTCCCTGCACGGGCTCTCTCTTGCCCGCCACCACGTAAGACATGTGTTTGCTCCTCCTTCACCTTCTGCCATGATTGTGAGGTCTCTCTAGCCGTGTGAA<br />ACTGTGAGTCCATTAAACTTCTTTTTCTTTAT

Expression



Full and truncated open reading frames discovered in ENST00000594119

In silico ORF/peptide predictions
>peptide 1 (88 aa)
TVCFSTYLSFSPSFPSFFFLFIFPLGFSSFQALLPSPALPSIPSLPLVLLLSHFFHLLFFFLPNICLQFSYSSASFFPPSLLPPSFPC

>peptide 2 (71 aa)
MEFCSSPRLECNGAILAHRNLRLPGKSDSPASVSRVAGITGIRHHAWLILYFLETGFLHVGQAGLKTPDLR

>peptide 3 (60 aa)
MHCLCKSLIHHLLCHLFCFVFCFLRWSFARRPGWSAMVRSWLTATSASRVKAILLPQSPE

>peptide 4 (59 aa)
MLVRLVSKLLTSGDLPASASQSAGITGVSHRTQLPSVYGSPSFFFPISPFFYFLSSTHS

>peptide 5 (59 aa)
MVLTKKSRLKVVSDGDEELYWNWSRGELQGRSPHGEPLLEQCRSKMWGWSPHTDYSLLA

>peptide 6 (54 aa)
MWKQILNWVTGKGWNSLEGSKEDRKTWESLELPRKWLLNGSDQKVQAEGGLRWR

>peptide 7 (50 aa)
MGLLHSSFPFHHFSISSPPHIHREGTAVRSPPQEPISCGMEFGTRETLTS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT067541 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 3.0E-22)