Detailed information on ENST00000594325

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000594325 507 287 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000594325 616 284 UTR3 Trans

Sequence

>ENST00000594325 (1020 nt)
GAGCGCCCGGGCCCGGGCGGCGGGGCGTGCGAACCGCGGGGCGGAGAGCCGAGCTCGGGGCCGGTGCGGCGCGAGCTCAAGCAGTTCCTGGGCTGGCTCA<br />AGAAGCACGCGTACTGCTCCAACCTCAGCTTCCGCCTCTACGACCAGTGGCGAGCCTGGATGCAGAAGTCGCACAAGACCCGCAACCAGGGGAAGGCTTC<br />AACCCAATTCGTGAAGGTATCAACACAGGCTAGTTTAGCGGCGGAAGGACTCGTCAGTATCTCCTGATGGAATAAGTACCCTTTGGCATCATCTTGCTAG<br />ATCCATCTTCCCTGAAGGCGGTCCCACCCTCTTCCACGGCAGCCAGGTCCTGATCTGCACAGGCTGCTCCTGCTGCCAGCCTGGATGGGAAGCCATCCCC<br />TACAACACACATGCCTTCCTGTCGCAGCCTCTCTCCTCTCTAACTCCAAGCTGGAGCACCCAACACTCTTAGCTTCCTTCTCAATTACACCAAAACTCTC<br />CAGACCCCACTTCTTGCCTTGACCCCAAACCACGAACATCACTTAGTATCTACCAACCACCTGCCAAGCATTGTTCACATATAAAAGTTGACTTAAAAAG<br />ACAAAGAATCGACCGGGCGCAGGGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGCAGACGGATCATTTGAGGTCAAGAGTTCAAGATGAGCC<br />TGGCTAACATGGTGAAACTCCGTCTCTACTAAAACTACAAAAATCAACTGGGCGTGGTGGCAGGCGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAG<br />AAGAATCGCTCGAGCCCGGGAGGTGGAGATTGCAGTGAGCCGAGACCGCACCACTGAACTCCAGCTTAGGCGACAGAGCAAGACTCCATCTGAAAAAAAT<br />ACAAATAGTCTAAAGAAAAGTCTAAAAAGCAGACACTACCACCAGCTCCTCCTTACAGACGTAGTAATGGAGCCAGGTATGAAGACTCAGCTCGAGAAAT<br />TTAGTATTTCCAAAGCGACT

Expression



Full and truncated open reading frames discovered in ENST00000594325

In silico ORF/peptide predictions
>peptide 1 (88 aa)
ERPGPGGGACEPRGGEPSSGPVRRELKQFLGWLKKHAYCSNLSFRLYDQWRAWMQKSHKTRNQGKASTQFVKVSTQASLAAEGLVSIS

>peptide 2 (76 aa)
APGPGRRGVRTAGRRAELGAGAARAQAVPGLAQEARVLLQPQLPPLRPVASLDAEVAQDPQPGEGFNPIREGINTG

>peptide 3 (70 aa)
SARARAAGRANRGAESRARGRCGASSSSSWAGSRSTRTAPTSASASTTSGEPGCRSRTRPATRGRLQPNS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT062984 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 1.0E-26)