Detailed information on ENST00000594413

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000594413 602 240 UTR3 Trans

Sequence

>ENST00000594413 (1542 nt)
TCTATTATTGATTTCTTATTTAATTTTGGTATAGCCAGAGAACACCATTTATGTGGATGATCTCGGCTCACCACAACCTCTGCCTCCTGGGTTCAAGCGG<br />TTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCATGCACGGCTAGTTTTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTG<br />GTCAGGCTGGTCTTGAACTCCCGACCTGAGGTGATCCACTGCCTCAGCCTCCTAAAGTGCTGGGATTACAAGTGTGAGCCACCACGCCCGGCCTTGTGTG<br />GTTTTAATTTATTAAAAATTGTTAAAGTTTACTTTATGACCCAGAATATGATCTATCTGGGTATATGTTCTGTGGGCACTTGGAAAGAATATGTATTCTG<br />TTGCTCTTGAGTAGAGTGTTTTATAAATGTCCGTTATATTAAACCAGTTGATAATGTTATCCAGGTTTTATATATCCTTTTTGATTTCCATCTATTTGTT<br />TATCAGTTATTGAGAACAGAGTTATTGAAGTCTCCCAGTTATGACTGTGGATTTTTCCATGTCTCTTTTAGTTCTATCAATTTTTGCTTCATTTATTTTG<br />GATCTTTGTTAGTTGCATACTATATTTCAGTGTTTATCTTCTTGGTGAATTGACCCTTTTATCATTATGTAACTTCCCTATATTTATATCTTTATATTTA<br />AAATAGATTTCCTTAAACCATAAGACATTTGAGAAGTAAAAATAAAATAAAATAGCTTTCTTGCTGATAGCATATAGTCGGGTCTTGTTTTTTTCTTTTT<br />CCAATCCGATAATCTTTGTCTTTTTTTTTTTTTTGGAAATGGAATCTTGCTCTACCACCTGGACTGGAATGCAATGACGTGATCTCAGCTCACTGCAGCC<br />TCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCACCCGCCACGATGCCCAGCTAATTTTTGTATTGTTAGT<br />AGAGACGGGGTTTCACCATGTTGGTTAGGCTGGGGGAGTTTTCTATTATTTATTTCTTGTTTAATTTTGGTATAGCCAGAGAACATGCTTTATGTGGTTT<br />TATTAAAAATTGTTAGTTTATTTTATGACCCAGAATATGATCTATCTGGGTATATGTTCTGTGGGCACTTGGAAAGAATATGTATTCTGTTGTTCTTGGG<br />TAGAGTGTTTTTTGTAAATGTCCATTATATTAAACCAGTTGATAACGTTATCCAGGTTTGATATATCCTTTTTGATTTCCATCTATTTGTTTATCAGTCA<br />TTGAGAATGGACTTATTGAGTCTCCCAGTTATGACTGTGGATTTTTCCATATCTCTTTTAGTTCTATCAATTTTTGCTTCATTTATTTTGGATCTTTGTT<br />AGTTGCATATTATATTTCAGTGTTTATCTTCTTGGTGAATTGACCCTTTTATCATTATGTAATTTCCCTATATTTATATCTTTATATTTAAAATAGGTTT<br />CCTTAACATTTGAGAAGTAAAAATAAAATAAAATGTAATAGC

Expression



Full and truncated open reading frames discovered in ENST00000594413

In silico ORF/peptide predictions
>peptide 1 (71 aa)
MLVRLVLNSRPEVIHCLSLLKCWDYKCEPPRPALCGFNLLKIVKVYFMTQNMIYLGICSVGTWKEYVFCCS

>peptide 2 (58 aa)
MLYVVLLKIVSLFYDPEYDLSGYMFCGHLERICILLFLGRVFFVNVHYIKPVDNVIQV


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT079473 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q6UX73|CP089_HUMAN (Evalue: 2.0E-18)