Detailed information on ENST00000594557

lncRNA-RNA interactions

Number of interactions: 47

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323816 growth arrest-specific 7 protein coding ENST00000594557 505 299 UTR3 Trans
ENST00000330676 TLC domain containing 2 protein coding ENST00000594557 612 278 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding ENST00000594557 630 285 UTR3 Trans
ENST00000421840 golgin A2 pseudogene 5 processed transcript ENST00000594557 513 274 noncoding Trans
ENST00000424496 sense_intronic sense intronic ENST00000594557 532 286 noncoding Trans
ENST00000437099 growth arrest-specific 7 protein coding ENST00000594557 505 299 UTR3 Trans
ENST00000448214 antisense antisense ENST00000594557 513 286 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000594557 544 309 UTR3 Trans
ENST00000620340 ribosomal protein S6 kinase, 90kDa, polypeptide 6 protein coding ENST00000594557 600 292 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000594557 585 283 UTR3 Trans
TCONS_00008385 nitric oxide synthase 1 (neuronal) adaptor protein novel protein coding ENST00000594557 630 280 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000594557 630 299 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000594557 630 299 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000594557 513 286 UTR5 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000594557 579 291 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000594557 511 288 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000594557 611 292 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000594557 546 303 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000594557 602 294 UTR5 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000594557 602 294 UTR5 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding ENST00000594557 612 291 UTR5 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000594557 653 292 UTR5 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000594557 640 293 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000594557 653 292 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000594557 617 290 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000594557 617 290 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000594557 613 291 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000594557 617 290 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000594557 651 274 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000594557 508 302 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000594557 573 288 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000594557 629 291 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000594557 652 310 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000594557 601 295 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000594557 601 295 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000594557 631 283 UTR3 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding ENST00000594557 607 291 UTR5 Trans
TCONS_00157915 cadherin 4, type 1, R-cadherin (retinal) novel protein coding ENST00000594557 517 328 UTR3 Trans
TCONS_00182611 processed_transcript novel protein coding ENST00000594557 501 311 UTR3 Trans
TCONS_00182613 processed_transcript novel protein coding ENST00000594557 501 311 UTR3 Trans
TCONS_00182614 processed_transcript novel protein coding ENST00000594557 501 311 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000594557 600 270 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000594557 643 291 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000594557 605 290 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding ENST00000594557 605 290 noncoding Trans
TCONS_00214444 zinc finger and SCAN domain containing 31 novel protein coding ENST00000594557 513 296 UTR3 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000594557 600 291 UTR5 Trans

Sequence

>TCONS_00247297 (4689 nt)
CTCGAGGTTAGCTCTTCACTGCCCTGTGTCTTCTTTCCAAGGGTCTCGGTGATTCGGCCACAGCCTCAGCCTCCATCACGCGGTGAACTGATGGTGCTGG
AAGATTCATAGACTCCAGGACATTCCTGAAGCCGAGAAAAGGTTAAGTAGGGTCTGGCCTGGAATACTCTCCTAGATGAAGATAGCCCAACCATGAGCCA
CCTTCGAAGCAGATGAGATGAAATTAAAGCTCTTCAACTCCTAAAGGCCCAGAGACTATCACAAAAGAGGTGGGCATGTGAGATTGTAAGAACTGATTTT
GAGAGATAAAATAAGTTCAGTTTTTCTATACATTAATCATTAATGTCAAAGGCACACTAATGCAAGACCAGAATAGGGGCCCCAGTGTTAGATTAACAAG
GTTTTCTTGAAGCATTAACTGACTCCTTAATAAAGGCTTATAGAAGTTATATCTCATGGTCAAGATTAGAATTTTATAGATTGTTCATAACATTTTGAAA
AACAAATTTAATTGGCTTTATGCTGTTTTATTGAAGATTATTGTTTGGAAAATTAAGTCTTGTCTCCCAAAGAATGAAGGTTTTTTCTTTTTTTGTTTTT
GAAATCTTTATTACTTTGGTCAAATTAATGACTTATTTTACAATGACCTGTGACATCAGGTGTTTTAAATCTTTGATATTTGACTGAGATTCTTTCTGTG
GAACAAAGTTCCATCAAACTTTCCAAAATCAAATTATAAATTATGTATTTTTCTTACCTAATCCTTTAAAATATTATGTTCCCTAAAGTTTAAAAATGAC
ATAATTTTGCTTATTTCTTATAAAAATTATACAGAGAACGTTGTTGAATATGAAATGGTGTTTGGTTTTTTTGGGCTGTGTTTGTATAAGTATATTATTG
GTATTTGTTCTAAAATTATGGGAAACTCCTATAATTCTTATATGACTTAGTGTACATTATTAGCAGTAATTATAATTGCTATATTGCCACAGAGGTAACA
AATTTCCTTGTCAATTGTATCTTTGACTTTGGTTGCCTTAAAACTTTTTGTCATTCACAGACAATTGTATTGTTTTGGTCCTCTTTAGAAGGTGGTTTTA
TAATCAGCTATAAAACTCTTAACAGGTGGTCTTGAATGCAAGTTTCTGATAACTTTGGAGATGGTGACATCAGAGTAGAGGAAAAAAATTCAGAACTCAT
GGAGAGCTGAAATGTTCATGAATATTAAGCAGAACAAGGATTAAGTGCATGCATTGAACTATTAGAAGACTGAAGTAATCTTTTTTTCTTTTTTTGAGTC
GGGGTTTCACTCGGTCTTCCAGGCTGGAGTCCAGTGGTGTGATCTCAGCTGAATTACAGATGCATGCCACCACACCTGGCTAAGTTTTGTATTTTTAGTA
GAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCCAAACTCCTGACCTCATGATCTGCCTGCTTGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCA
CCGAGACCAGCTGATCTTTTTGACTTTTTACTTAAAATGTTGCTGATCCTTTCTTTTGTTTTCTGAGTCAAGGAAACCTACCTTTTGATCTATTTACAGC
TTTTAACAAGTTAGTATACTCCTGTGAACAAAATTTAAAGCATATTTAATTCTCTCTACTTGATTTCTCTAGAATTTGGAAACTATTTGTGAGTATTCTT
AACTTATGGCAATACATTTATTTGCATAAGTGCATTAAGAATGTTTTTTTTTGTTTGTTTTGTTGTGTTATTTATTTATTTTTTGAGACAGAGTCTCACT
CTGTTGCCAGGCTAGAGTGTGGTGGCCCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATCCTCCTGCCTTGGCCTCCCAGGTAGCTGG
GACTACAGGCGAGCGCCACCATGCCCAGCTGATTTTTTATATTTTTAGTAGAGATAGGGTTTCACCATGCTGGCCACTATGGTCTTGATCTCTTGACCTC
ATGATTCACCCATCTTGACCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCACGCCCTGCCAAGAATCTGGTTTTTATAAGTAACAGGACACAATTG
GAGAAACTGGTTATTTTACCAACACTTTGACTGGAATGGTGTTCCTTTTTTAAGGAATCAAACTTGATTTATGGAGCCAATTAAAAGCCCCTCGGGAAAA
CTGGATTCAAATCTTGTCTACATATTCCCTGTACTATGACATTTTTACTTACCACAGGTCAGAAATCCTGAAGGTCACTTTCTGACAAACTCAGGAACCC
CAGGTTTATCTTGGAGCCTCAAGAGGAGATAAATTCACCCAACTCAGGTATTTGATGGTACAAATCCATGTCTGGGGTTGGCTTTTAAAAAGTATTATCT
GAGATTCCTTCTGTGGAACAAAGTTCCATCGGGGAAAAATTGTGCAAATGTAATAAATTTGGAAAAACACTTTTTCAAAAACTACAGCTTAGAAAACAAC
AGAGAGTTCATACTGGAGTATGCTTTTGCAGATGCAGTACATGTAAAAAAATATTTAATCCATAATTAAGTCTATGCAAATATCAGAATTTATGGTAGAA
ATATATAAGGCACTGACACACTTCACGTATTCTAAATCAGTGCTGAGTATAGGAAATCTAAAACTAAAGTTGGCAGAAAAATTATTTGTATGTAACTTTC
AGAGGATCAGAAGGTTTTTTGCAGAATTATAATTACATTCAAAGTATATTTCTTGAAAAAAATACAGATTTTTTGAAAAGTGAATAATGATGTCATTCAA
CTCTGAAATTATTTCCTGCTGTTTCTTCATTCCTATTGGAGTCAAATGTGAAAGCATAGGATCAATTGTTGCTGCGTCAAAGATGTGAGAGATTCTTTTT
GTTTTGTTTTGTTTTCTGTTTTTTTGAGATGGAATTTCGCTCTTTTGCCCAGGCTGGAGTGCAGTGGAATGATCTTGGCTCACTTCCGTCTCCGCCTTCC
AGTTTCAAGTGATTCTCCTGCCTCAGCCTACTGAGTAGTTGGGATTACAGGTGCCTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAAAGATGGGG
TTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACGTCATGATCTGCCCGCTTCAGTCTCCCAAAGTGTGATTACAGGTGTGAGCCACCATGCCTGG
CAAGGCATTCTTTTTTATTAGGGGGGTGTTGTTTATTACCTCTTCTATAGAAAAGTAAAGACATTAAAATGTAAGATGCATAATAAAAATCTAAGTGGAG
AGGCTCTTATAACCTATAATATTGAGTGATGCATCAGGTAGGTGTTCAGAGTAATCTGCATTATCATGAGAAGAAAACATGTTTAATTTTATTTAAAATT
AAATGAGTAGTATATTATTGTACTAATTGTACTAATTTTTTCTGAGACAGAGTTTTGCTCTTGGTGCCCAGGCTGGAGTGCATTGGCACGATCTCTGGCT
CACTGTGACCTCTGCCTCCCAGATTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACGGGCATGTGCCCCCATGCCTGGCTAATTTTGA
ATTTTTAGTAGAAACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTGCCAACCTCAGGTGATCTGCCCACTTTGGCCTCCCAAAGTGCTGGGATT
ACAGGCATGAGCCACCGAGCCTGGCCTGATTGTACTTTTATATAATAAAATGCAGTACATTTATAAATTTTAGATTATGTGTGAAGTTAATAGTTTAATT
CAACATTTTTAACATGTTAAATACTATTGTGCATTCAATGAAGCGTTATTATGCCACAAACTTTAACCTCTTTCACCTTACTCAAGGGTATAGGTAAAAG
ATGGTAACAATATACTGTTTAGTAAGATAATAGATTAACATCTCTAGTGATTTTTTTTTTTTGCCAGTGGCTTTCAACTGCAAATAAGTTAAAGAATATT
GTTTCTGTAGGTAAATTTTTATTCTGTTTTTAATCATTTAAATTTATTTTAATTTTGGTGGCTGCATGAGTATCTATGCAATATATGGCATGTTTTAATA
CAGGAATACAATATATAATAATAATATCAGCATTAAGTGAGGCATCCTTCACCTGTAGCATTTATCCTATGTTTTATAATCCAATTCTACACTTTTTTTT
AAATTTAAAATGTACAATTAAATTGTTATTTACTACAGGGTTATTTTTATGGTCATAATAAAAATTATATATGAGTATAAATAAAATTCATTGTTAAATT
CTTAATATTTTTTCAAATTTCTTATATATTTTTCTTGGAACATGTGGCCTGTCTGCCTGCAAACACATAAGACTTTTAGTTTTGATTTACATAGAGTTAA
ATATTTATTAATCTAAAGACAAACCTTAGGTGTAAGAAAATTATGGAGTAAGTGTGTTGGGAGTTTGAGACCAGCCAGACCAACGTGGATTAACCCCGTC
TCTACTAAAAACACAAAATTAGCCGGGCGTGGTGGCATATGCCTGTAATCCCAGCTACTTGGGAGGCTAAGCCAGGAGAATCGCTTGAGCATGGGAGGCG
GAGGCGGAGGTTGCAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAGCAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00247297

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.