Detailed information on ENST00000594701

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000513143 podoplanin protein coding ENST00000594701 509 260 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000594701 601 259 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000594701 573 259 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR3 Trans

Sequence

>ENST00000594701 (2777 nt)
GCAATGCGTCAAACTGGGGCGAGCCACTGCAAGGTGGTGGTGGGTAAGTCTGAACTCTGTGGCCGCGTGGGGCTTTGAGGAGTAACGAGGCGAAGGGGGA<br />AACGGCGTCGCCGTTAGAGAAGCAAATACGTCGTTTCTGTGGCCAGGAGGTGGTAAAAAGGCTGGCGACAAATGCAGAAGGGCTTTCTCGGCTCTCCCCT<br />TTAACCGACGGACGATGGTTCAATCCAAAATGCTAGGGTTTAGAAGCTCCGCCCCTAACTGGGCCTTTGGAGGTGGCGGGGTCTCCAAGGTGCCACCTAA<br />CGCTCAGAGGTTCCGCCCTCCGTGGTCTTGTCTCTGCGTCCTAAGACGCACTCAGCCGGTGGGCGGGACCCCTGGGCCCGCTTCATTCTTGATCCGCTCA<br />GGGTCTGTGAAATTAGGACCATCCCAGGACAGCCTGTGGGAACGGGGTATTCATTCAGTCATTCGTGCTATAAGCATCAATTAGGCGCCTGCTGTATGCA<br />GGGACCTGAGCTTGGCTGGGCTGGGGAGACCATACTCCCCAACCAGCCTCTCCAGACAGACGACCTCTTTCCTTATTCCAGTGTTCCAGCCATAGGAGGA<br />AAAAGAACTGAAACTTTGTTTATAGGAGCTCAGAAAATGATCACCCCTGCCCCCTCCCCCGTTTAGGATAGGAGCTGACAGTCTCCTGCGTGTCCCCTCC<br />CCACCATGTTGATGGTTAAGAGATGGGCAAACGAGTCAGGCTGGACCAATCATTATGCTCCACCTGGAACAGAATGGAGACTGAACCAATGAGAGTCCTT<br />CCCTGGGGTTTGGATCTGCAGCCTGGGCACAAGAAGCCTTTTCCTTTTGGGTGGGTCCTTCCCATAGATTCTGACTATGGTCATTTTCCCACTCTGCCCC<br />CTATCTTGAGGAACAAAGTGTCTAGAGAAGAAGAGAAAAATAAAACTGACACAGTGGAGAGGTAAAGAAGATGGCCGGGCGCGGTGGCTCATGCCTTTAA<br />TCCTAACACTTGTTACTCAGTCTCAAATCTCATGTTAAAATGTGATCACCAATGTTGGAGGTGGGGCCTGGTGGGAGGTGTTTGGGTCATAGGGGTGGAT<br />CCCTCATGAATGACTTGGTGCTGTCCTCACGGTAACAAGTGAGTTCTTATTCTGTTAGTTCACACAAGATCTGTATTTTTTTTGAGACGGAGTCTTGCTC<br />TGTCACATAGGCTAGAGTGCAGTGGCATGATCTTGGCTCACTACAACCTCCGCCTCCCAGGTTTAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGTTGG<br />GACTACAGGCACCCACCACTACACTTGGCTAATTTTTGTATTTTTAGTAAAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCTTGAGCTCA<br />AGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGTAATCACAAGAATACAACCATCAGGAGTGCCTCAAGGGAGAAATATCCTCTGAGAATAGCCACAGA<br />CAAAGTGGGGAGGTGGGACTACCATCCCCAGCCCTGGAAACTCTCTCTACTCTATAACTTGGCCAAAGGAGATGCCAAATCAGAGTGGCTGTTCGTTAGC<br />ACCATGCTGTGGGAGGTTTCTTCCATAGCTCCCCTGGGAATGAACCCCTAGCCAGCTTTCCTATGCTACTGGGATATCCCCTTTGGGACCTCCCCCATTC<br />GGGATGGGAGACGCTCTGATCTTTAATAGAGCCAAGGCAAACCTGGTTTTAAGGTGCCACTGAGTGCTAAAAAGGAGGCAGCAACCTAGCAGAAAAAAAG<br />AAACCAACAGGTCAATTACGAAGAATCTGTAAGCAAATGGAGCCAGTAAAAGCCAAAACAAGCCAGACGGAGAAGGCTGGAATAAGTGACTAATCCTTCA<br />GTGCAAAGGCATAGATGTACATTAACAACAAACCAAAGCAAACAGGGAACCATGAGCTCCCCAAATGGACCAAGTAAGGGACCAGTGACTAAACCTAACA<br />AGACAGTAATATGTGAGCTTTCTAAGAATTCAAAATGGCATTTTTAAGGAAACTCAGTGAATTCCAAGACGACATAGAAAAGCAACGCAGAAATTTATCA<br />GTGAAATTTAACAAAGAGATTGAAATAATAATTTAAAAAAAACCCAAACAAATCTTAGAACTGAGAAATACATTTGCTGAACTGAAAAGTTCATTAGAGG<br />TTCTCAACAGCAGAGTGGGTCAAGCAGAGGAAACAATCAGTGAACTTGGAGACGGGCTGTTTGTAAATACATACAGAAGAAAAAAGAAAAAAGAATGAAA<br />GGAATGGAAATCACCTACGAAATATAGAAGACAAAATCTAAGAATTATTGGTGTTCAAGAGGGAGCTGAGGAGGAGCAAGGGGATAGAAAGGATATTCAA<br />AGAAACAATGGAAGACATTCAAAAATTGCAAATATCCAGGTACAGAAAGGCCAGAGAACACCAAATAGATTTGATTACCCCAAGGCATATAATAATCAAA<br />CTCTCAAAGGTCAAGAACAAAGAGAGGATCCTAGAAACAGTAAGAGAAAAGAAGGAAATAACACTTAAAAGAGCTCTAATTTACCTGGCCACAGACTTCT<br />CAATCAAAACCATGAAGGCCATACAAGAATACTGTATCAAGCAAAGCTATTATTCAAATATGAAGAAGAGATAAAGTTTTTCCCAAATAAAAGCAGAGAG<br />AATTCACCACTACCAGATCTGTATTATAAGAAATGCTCTCTTGAAGAAAGACAGTTCCAGAGAGTTCCTCAATCCGG

Expression



Full and truncated open reading frames discovered in ENST00000594701

In silico ORF/peptide predictions
>peptide 1 (89 aa)
MVQSKMLGFRSSAPNWAFGGGGVSKVPPNAQRFRPPWSCLCVLRRTQPVGGTPGPASFLIRSGSVKLGPSQDSLWERGIHSVIRAISIN

>peptide 2 (88 aa)
MEDIQKLQISRYRKAREHQIDLITPRHIIIKLSKVKNKERILETVREKKEITLKRALIYLATDFSIKTMKAIQEYCIKQSYYSNMKKR

>peptide 3 (86 aa)
MILAHYNLRLPGLSDSPASASQVVGTTGTHHYTWLIFVFLVKTGFHHVGQAGLKLLSSSDPPALASQSAVITRIQPSGVPQGRNIL

>peptide 4 (80 aa)
MGKRVRLDQSLCSTWNRMETEPMRVLPWGLDLQPGHKKPFPFGWVLPIDSDYGHFPTLPPILRNKVSREEEKNKTDTVER

>peptide 5 (56 aa)
MQGPELGWAGETILPNQPLQTDDLFPYSSVPAIGGKRTETLFIGAQKMITPAPSPV


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT066898 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 1.0E-22)