Detailed information on ENST00000594701

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000513143 podoplanin protein coding ENST00000594701 509 260 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000594701 601 259 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000594701 573 259 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000594701 600 259 UTR3 Trans

Sequence

>TCONS_00098647 (2776 nt)
GCAATGCGTCAAACTGGGGCGAGCCACTGCAAGGTGGTGGTGGGTAAGTCTGAACTCTGTGGCCGCGTGGGGCTTTGAGGAGTAACGAGGCGAAGGGGGA
AACGGCGTCGCCGTTAGAGAAGCAAATACGTCGTTTCTGTGGCCAGGAGGTGGTAAAAAGGCTGGCGACAAATGCAGAAGGGCTTTCTCGGCTCTCCCCT
TTAACCGACGGACGATGGTTCAATCCAAAATGCTAGGGTTTAGAAGCTCCGCCCCTAACTGGGCCTTTGGAGGTGGCGGGGTCTCCAAGGTGCCACCTAA
CGCTCAGAGGTTCCGCCCTCCGTGGTCTTGTCTCTGCGTCCTAAGACGCACTCAGCCGGTGGGCGGGACCCCTGGGCCCGCTTCATTCTTGATCCGCTCA
GGGTCTGTGAAATTAGGACCATCCCAGGACAGCCTGTGGGAACGGGGTATTCATTCAGTCATTCGTGCTATAAGCATCAATTAGGCGCCTGCTGTATGCA
GGGACCTGAGCTTGGCTGGGCTGGGGAGACCATACTCCCCAACCAGCCTCTCCAGACAGACGACCTCTTTCCTTATTCCAGTGTTCCAGCCATAGGAGGA
AAAAGAACTGAAACTTTGTTTATAGGAGCTCAGAAAATGATCACCCCTGCCCCCTCCCCCGTTTAGGATAGGAGCTGACAGTCTCCTGCGTGTCCCCTCC
CCACCATGTTGATGGTTAAGAGATGGGCAAACGAGTCAGGCTGGACCAATCATTATGCTCCACCTGGAACAGAATGGAGACTGAACCAATGAGAGTCCTT
CCCTGGGGTTTGGATCTGCAGCCTGGGCACAAGAAGCCTTTTCCTTTTGGGTGGGTCCTTCCCATAGATTCTGACTATGGTCATTTTCCCACTCTGCCCC
CTATCTTGAGGAACAAAGTGTCTAGAGAAGAAGAGAAAAATAAAACTGACACAGTGGAGAGGTAAAGAAGATGGCCGGGCGCGGTGGCTCATGCCTTTAA
TCCTAACACTTGTTACTCAGTCTCAAATCTCATGTTAAAATGTGATCACCAATGTTGGAGGTGGGGCCTGGTGGGAGGTGTTTGGGTCATAGGGGTGGAT
CCCTCATGAATGACTTGGTGCTGTCCTCACGGTAACAAGTGAGTTCTTATTCTGTTAGTTCACACAAGATCTGTATTTTTTTTGAGACGGAGTCTTGCTC
TGTCACATAGGCTAGAGTGCAGTGGCATGATCTTGGCTCACTACAACCTCCGCCTCCCAGGTTTAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGTTGG
GACTACAGGCACCCACCACTACACTTGGCTAATTTTTGTATTTTTAGTAAAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCTTGAGCTCA
AGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGTAATCACAAGAATACAACCATCAGGAGTGCCTCAAGGGAGAAATATCCTCTGAGAATAGCCACAGA
CAAAGTGGGGAGGTGGGACTACCATCCCCAGCCCTGGAAACTCTCTCTACTCTATAACTTGGCCAAAGGAGATGCCAAATCAGAGTGGCTGTTCGTTAGC
ACCATGCTGTGGGAGGTTTCTTCCATAGCTCCCCTGGGAATGAACCCCTAGCCAGCTTTCCTATGCTACTGGGATATCCCCTTTGGGACCTCCCCCATTC
GGGATGGGAGACGCTCTGATCTTTAATAGAGCCAAGGCAAACCTGGTTTTAAGGTGCCACTGAGTGCTAAAAAGGAGGCAGCAACCTAGCAGAAAAAAAG
AAACCAACAGGTCAATTACGAAGAATCTGTAAGCAAATGGAGCCAGTAAAAGCCAAAACAAGCCAGACGGAGAAGGCTGGAATAAGTGACTAATCCTTCA
GTGCAAAGGCATAGATGTACATTAACAACAAACCAAAGCAAACAGGGAACCATGAGCTCCCCAAATGGACCAAGTAAGGGACCAGTGACTAAACCTAACA
AGACAGTAATATGTGAGCTTTCTAAGAATTCAAAATGGCATTTTTAAGGAAACTCAGTGAATTCCAAGACGACATAGAAAAGCAACGCAGAAATTTATCA
GTGAAATTTAACAAAGAGATTGAAATAATAATTTAAAAAAAACCCAAACAAATCTTAGAACTGAGAAATACATTTGCTGAACTGAAAAGTTCATTAGAGG
TTCTCAACAGCAGAGTGGGTCAAGCAGAGGAAACAATCAGTGAACTTGGAGACGGGCTGTTTGTAAATACATACAGAAGAAAAAAGAAAAAAGAATGAAA
GGAATGGAAATCACCTACGAAATATAGAAGACAAAATCTAAGAATTATTGGTGTTCAAGAGGGAGCTGAGGAGGAGCAAGGGGATAGAAAGGATATTCAA
AGAAACAATGGAAGACATTCAAAAATTGCAAATATCCAGGTACAGAAAGGCCAGAGAACACCAAATAGATTTGATTACCCCAAGGCATATAATAATCAAA
CTCTCAAAGGTCAAGAACAAAGAGAGGATCCTAGAAACAGTAAGAGAAAAGAAGGAAATAACACTTAAAAGAGCTCTAATTTACCTGGCCACAGACTTCT
CAATCAAAACCATGAAGGCCATACAAGAATACTGTATCAAGCAAAGCTATTATTCAAATATGAAGAAGAGATAAAGTTTTTCCCAAATAAAAGCAGAGAG
AATTCACCACTACCAGATCTGTATTATAAGAAATGCTCTCTTGAAGAAAGACAGTTCCAGAGAGTTCCTCAATCCGG

Expression



Full and truncated open reading frames discovered in TCONS_00098647

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.