| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000367590 | xenotropic and polytropic retrovirus receptor 1 | protein coding | ENST00000596669 | 506 | 250 | UTR3 | Trans | |
| ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000596669 | 571 | 285 | noncoding | Trans | |
| ENST00000552918 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000596669 | 595 | 280 | UTR3 | Trans | |
| ENST00000553127 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000596669 | 613 | 289 | UTR3 | Trans | |
| ENST00000560870 | sense_intronic | sense intronic | ENST00000596669 | 504 | 269 | noncoding | Trans | |
| TCONS_00009095 | xenotropic and polytropic retrovirus receptor 1 | novel protein coding | ENST00000596669 | 506 | 250 | UTR3 | Trans | |
| TCONS_00033132 | dynein heavy chain domain 1 | novel protein coding | ENST00000596669 | 517 | 289 | UTR3 | Trans | |
| TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000596669 | 613 | 289 | UTR3 | Trans | |
| TCONS_00075844 | forkhead box N3 | novel protein coding | ENST00000596669 | 504 | 289 | UTR3 | Trans | |
| TCONS_00075845 | forkhead box N3 | novel protein coding | ENST00000596669 | 504 | 289 | UTR3 | Trans | |
| TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | ENST00000596669 | 528 | 305 | UTR3 | Trans | |
| TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | ENST00000596669 | 530 | 300 | UTR3 | Trans | |
| TCONS_00101169 | myosin phosphatase Rho interacting protein | novel protein coding | ENST00000596669 | 546 | 281 | UTR3 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000596669 | 539 | 252 | UTR3 | Trans | |
| TCONS_00161482 | BTB and CNC homology 1, basic leucine zipper transcription factor 1 | novel protein coding | ENST00000596669 | 624 | 293 | UTR3 | Trans | |
| TCONS_00240045 | zinc finger protein 706 | novel protein coding | ENST00000596669 | 609 | 290 | UTR3 | Trans | |
| TCONS_00240046 | zinc finger protein 706 | novel protein coding | ENST00000596669 | 609 | 290 | UTR5 | Trans | |
| TCONS_00251977 | G protein-coupled receptor 82 | novel protein coding | ENST00000596669 | 515 | 278 | UTR3 | Trans |
>TCONS_00251977 (837 nt)
CCCTAGGAATCTAATACACTGCCCATGTAAGTGAATATTAGCTATTTGCTGATAAGACAAGAATTTCTGGTTATAATAAATATACTGGAATAGAATGTGG
TTTCTTTTTTTTTGAGATGGAGTCTCGCTCCAGTCACCAGGCTGGAATGCAGTAGCGTGATCTCGGCTCACTGTAACCTCTTCCTCCCAGGTTCAAGCAA
TTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGACTACAGGCGCCCGCAACCATCCCCGACTAATTTTTGTATTTTTAGTTGAGACGGGGTTTCACCATATT
GGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCATCTGCCTCGGTCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACAACACCCGGCCGAATGTG
GTTTCTTAGTGAGTCCTTTACTCAAGGCTGGAATTAAACAAAGGAGATGAATCACGAGCTCTATGATAATAGTCTAATAGTCTAATCTAGCCCTCTTAAG
TGCAGAGATGTTTTCCCTCTGAACACCCGTGTGTTTCAGCTCTGTTCCTCTTCCAATGCCCTTCCACAGGGAACAAATCCTTTCTTGACCACCAATGGCT
GCATGACTTATCCTGAGAAGATCATGGGGATTTTGGATGCCAGGTCAACCCTTACACTCAGCAAGGAAGTGGAAGGGCCTCAGTTTCAAACACTTTGTAA
ACACAGAGGTTAGGTCATTTCCTCTCCAATAAGCCAGAAGCTGAGCTGTCCCTGGCAGCAAACTGTGTGTCAAATGCCTGGCGGGTTTCAGGTTTTACTA
ACTCCAGAGTGACGAAACATCACCACCTCTAATGCCAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.