Detailed information on ENST00000596694

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00116334 low density lipoprotein receptor class A... novel protein coding ENST00000596694 907 759 UTR3 Trans

Sequence

>ENST00000596694 (2719 nt)
GCTGCATCCTGACTCTGGGTTGGAAACTTCGTGGTGGATGATGCCTGTAACTACCCAGATGAAATCAAGACGCAACAGCCCTCATCGAGGGATGCTCAGA<br />GTCAAGGAAACTTTTCTTTTGAGCTACTGACAGCTTAACTCCTGTGAACAAAATTTGGAGCATATTTGTTTCTCTCTGCCTGATTTCTCCAAAATTTGGA<br />AACTATTTGTGAGTATTCTTAACTTATAGCAATATAGTTATTTGCATAAGTACAATAAGGATCTGTTTTCTTTTGCAAACAGACACAATTGGAGAAACTG<br />GTGATTTTACCAAAGCTTTGATTGGAATGGTATGTTTTCCTTTAAGGAATCAAACTTGACTTATAAAGCCAATAAAAGCCCCTTGGGAAACCTGGCCTCA<br />TGCCTTGTCTACACAGTCCCTGTACAGGGTTCCCGACCTGTGGTAAGTAAAGAATGTCACTTTCTGATTGGCCCAGGAGCCCCAGGTTATCTTGGGACCT<br />CAAGAGGAGAGGAATTTACCCAACTCAGGTATTTGAGGGTGCAAACTCACGGCTGGGCTCAGCTTTTAAAAAGTCTTATCTGAGATTCATTTTATGAAAC<br />ACAGTTCCATCAAAGTCAATTTTAAAAGCCTCTGTGAAAAATAATTATTATTGCTGCACTTTATACAAATAATTAGGCCAAGTATAATAAAGCAAATTGG<br />TTTTGCCATGATTTGTCTTTAGTAAAAAATGGGAGACTGGAGAGAGAAAAATTATGTTTCAAGAACTATGGTACACCTGTTATTAGATTCTAATCTCATC<br />AGTTGTTTTTGAGGGTTTTCTTCTGCAATTTAGACTGACTGCTTATTCCTGTGAGCCAACCAGTGATCTCTGGTTGCAGTTCAGAATAAACAAGACAGAT<br />ACCACCTTTTGTCAGAACTCGGAGTTACAAGTGACCCTCACCATAATTATGCTTTCTGAGCTCCTCTCTACCCTGAATACAAGAGACCCTAACAGTTAGG<br />CAGGAAAGCATTGCCCCTATTCAGCCTGAAGAAGTTACAGAATATGGATCTTCATCCTTCCACAACCCTTAGGATTAAGAGTTGCCTTGTAAAAGGGAGG<br />GGGGAAATGTCAGAGACATTTGAATCAGAACAACTCCACCTTGAATAGGGTCTGGGTAAAACAAGGCTGAGAACTGCTGGGTTGCATTCCCAGATGGTTA<br />AGGCATTCTAACTCACCGGATGAGATAGGAGGTCAGAACAAGATACAGCTTATAAAGACCTTGCCGATAAAACAGGTTGTAGTAAGAAAAGCCGGCCAAA<br />ACCAAGATAGCAACAAAAGTGACTTCTAATTGTCCTCACTGCTCATTATATGCTAATTACAGTGCATTAGCATGCTAAAAGACACTCCTACCCACACCAA<br />AACAGTTTACAAATTCCATAGCAACATCAGAAAATTACCCTATATAGTCTAAAAAGGGGAGGAACCCCCAGTTCTGGGAATTGCCCACTCTTCCTGGAAA<br />ATTCATGAATAATCCACCCCTTGTGATATGATTTGGCTGTGTGTAGCCTAGGGACTTGATATCCTGCATCCCAGTTGCTCTAGCCATGGATAAAAGGGGC<br />CAAGGTACAGCTGGGGCCATGGCTTGAAAGGGTGCAAGCTCCAAGCCTAGGCAGCATCCACATGGTGTTGAGCCTGCGGGTGCACAGAGGTCAAGAATTG<br />AGGTTTGGGAACCTCCGCCTAGATTTCAGAGGATGTAGAGAAATGCCTGGATGTCCAGTCAGAAGTTTGCTTCAGGAACAGCGCCCTCATGGAGAACCTT<br />TGCTAGGGCAATGAAGAAGGGAAATGTGGGCTTGAAACCCCACACAGAGTCCCCACTGAGGCACCGCCTAGTGGGGCTGTGAGGAGAGGGCCAGCGTCCT<br />CCAGACCCCAGAATGGTAGATCCACCAACAGCTTACACTGTGCACCTGGAAGAGCCATAGACACTCAACACCAGGAGTGAAAGCAGCCACAAAGACACAG<br />AGGCAGAGCTGCCCAAGACCATGGGAACCCACCTCTTGCAGCATAACTTGGATGTGAGAAATGGTGTCCATGGAGATAATTTCAGAGCTTTAAGATTTGG<br />CTGCCCTGCTGGATTTCTAACTTGCATGGGGCCTGTAGCCCCTCCATCTTGGCCAGTCTGTCACATTTGGAATGGGTGTATTTACCCGATACCTGTACCC<br />CCATTGTATCTGGGAAGTAACTAAGTTGCTTTTGATTTTACAGGCTCCTAGGTGGAAGGAACTCACCTTGTCTTAAATGAGACTTTGGACTATGGACTTT<br />TAAGTTTATGCTGAAATGAGTTAAGAATTTGGGGGACTGTGGGGAAGGTATGATTGGTTTTAAAATGTGAGAACATGAAATTTGGGAGGGGTTGGGGGCA<br />GAATGATATGGTTTGGCTGTGTCCCTACCCAAATCTCATCTTGAATTGTAGCTCCCATAATTCCCGCCTGTCATGGGAGGGATGCAGTGGGAGGTAATTA<br />AATCATGGGGACGGGTCTTTCCCATGCTGTTCTCATGGTAGTGAATAAATCTCAAGAGTTCTGATGGTTTTATAAATGAGAGTTCCCTTGCACAAGCTCT<br />CTCTTTGCCTGCCACTATGTAAGATGTGGCTTTGCTCCTCCTTGCCTTCCTCCATGATTGTGAGGCCTCCTCAACCAGGTGAAACTGTGAGTCAATTAAA<br />CCTCTTTCCTCTATCAATT

Expression



Full and truncated open reading frames discovered in ENST00000596694

In silico ORF/peptide predictions
>peptide 1 (83 aa)
MFSFKESNLTYKANKSPLGNLASCLVYTVPVQGSRPVVSKECHFLIGPGAPGYLGTSRGEEFTQLRYLRVQTHGWAQLLKSLI

>peptide 2 (67 aa)
MGTHLLQHNLDVRNGVHGDNFRALRFGCPAGFLTCMGPVAPPSWPVCHIWNGCIYPIPVPPLYLGSN

>peptide 3 (50 aa)
MVLSLRVHRGQELRFGNLRLDFRGCREMPGCPVRSLLQEQRPHGEPLLGQ


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT066843 (Evalue: 0)