Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000394622 | STEAP family member 2, metalloreductase | protein coding | ENST00000597555 | 600 | 269 | UTR3 | Trans | |
ENST00000423516 | transketolase | protein coding | ENST00000597555 | 554 | 270 | CDS | Trans | |
ENST00000467462 | inter-alpha-trypsin inhibitor heavy chain family, member 4 | processed transcript | ENST00000597555 | 536 | 272 | noncoding | Trans | |
ENST00000472528 | transketolase | nonsense mediated decay | ENST00000597555 | 554 | 270 | UTR3 | Trans | |
ENST00000517408 | antisense | antisense | ENST00000597555 | 515 | 272 | noncoding | Trans | |
ENST00000553936 | gephyrin | nonsense mediated decay | ENST00000597555 | 627 | 268 | CDS_UTR | Trans | |
ENST00000604000 | Lix1 homolog (chicken) like | protein coding | ENST00000597555 | 617 | 267 | UTR3 | Trans | |
TCONS_00001594 | lincRNA | novel protein coding | ENST00000597555 | 624 | 286 | UTR5 | Trans | |
TCONS_00033132 | dynein heavy chain domain 1 | novel protein coding | ENST00000597555 | 629 | 268 | UTR5 | Trans | |
TCONS_00034643 | CD82 molecule | novel protein coding | ENST00000597555 | 625 | 266 | UTR3 | Trans | |
TCONS_00038233 | protease, serine, 23 | novel protein coding | ENST00000597555 | 619 | 268 | UTR3 | Trans | |
TCONS_00108999 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000597555 | 640 | 268 | UTR5 | Trans | |
TCONS_00109000 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000597555 | 640 | 268 | UTR5 | Trans | |
TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000597555 | 640 | 268 | UTR3 | Trans | |
TCONS_00109012 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000597555 | 640 | 268 | UTR3 | Trans | |
TCONS_00109013 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000597555 | 640 | 268 | UTR3 | Trans | |
TCONS_00109014 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000597555 | 640 | 268 | UTR3 | Trans | |
TCONS_00140732 | NCK adaptor protein 2 | novel protein coding | ENST00000597555 | 623 | 267 | UTR5 | Trans | |
TCONS_00141670 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000597555 | 619 | 269 | UTR5 | Trans | |
TCONS_00141673 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000597555 | 619 | 269 | UTR5 | Trans | |
TCONS_00141679 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000597555 | 619 | 269 | UTR5 | Trans | |
TCONS_00148048 | potassium voltage-gated channel, subfamily G, member 3 | novel protein coding | ENST00000597555 | 623 | 267 | UTR3 | Trans | |
TCONS_00163348 | runt-related transcription factor 1 | novel protein coding | ENST00000597555 | 648 | 267 | UTR3 | Trans | |
TCONS_00163350 | runt-related transcription factor 1 | novel protein coding | ENST00000597555 | 648 | 267 | UTR3 | Trans | |
TCONS_00163352 | runt-related transcription factor 1 | novel protein coding | ENST00000597555 | 648 | 267 | UTR3 | Trans | |
TCONS_00165341 | TTC28 antisense RNA 1 | novel protein coding | ENST00000597555 | 604 | 270 | UTR5 | Trans | |
TCONS_00173724 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | ENST00000597555 | 602 | 271 | UTR5 | Trans | |
TCONS_00173729 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | ENST00000597555 | 602 | 271 | UTR5 | Trans | |
TCONS_00173730 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | ENST00000597555 | 602 | 271 | UTR5 | Trans | |
TCONS_00180672 | transketolase | novel protein coding | ENST00000597555 | 554 | 270 | UTR5 | Trans | |
TCONS_00180673 | transketolase | novel protein coding | ENST00000597555 | 554 | 270 | UTR5 | Trans | |
TCONS_00187460 | spermatogenesis associated 18 | novel protein coding | ENST00000597555 | 610 | 267 | UTR3 | Trans | |
TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000597555 | 616 | 267 | UTR5 | Trans | |
TCONS_00199451 | solute carrier family 12 (sodium/potassium/chloride transporter), member 2 | novel protein coding | ENST00000597555 | 653 | 269 | UTR3 | Trans | |
TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | ENST00000597555 | 583 | 270 | UTR3 | Trans | |
TCONS_00237103 | cathepsin B | novel protein coding | ENST00000597555 | 619 | 267 | UTR5 | Trans | |
TCONS_00239255 | tumor protein D52 | novel protein coding | ENST00000597555 | 616 | 267 | UTR3 | Trans | |
TCONS_00239255 | tumor protein D52 | novel protein coding | ENST00000597555 | 633 | 262 | UTR3 | Trans | |
TCONS_00240045 | zinc finger protein 706 | novel protein coding | ENST00000597555 | 610 | 267 | UTR3 | Trans | |
TCONS_00240046 | zinc finger protein 706 | novel protein coding | ENST00000597555 | 610 | 267 | UTR5 | Trans | |
TCONS_00243477 | osteoclast stimulating factor 1 | novel protein coding | ENST00000597555 | 640 | 266 | UTR5 | Trans | |
TCONS_00243482 | osteoclast stimulating factor 1 | novel protein coding | ENST00000597555 | 640 | 266 | UTR5 | Trans | |
TCONS_00245543 | long intergenic non-protein coding RNA 963 | novel protein coding | ENST00000597555 | 634 | 276 | UTR3 | Trans |
>TCONS_00245543 (1600 nt)
GTTGAGGCCCTTCTTGTGTATCTGGAGAAAATAGAGGTTCTGACTCCTCAGGAGCAAAAAACATAACCTGAAGAGGGAGGAAGTGGATTTGGGGTTCACC
ATTTCTTGGGGCACACTTGATTGAAAACTGAGACTTCTGAAGAGAAGGCCAGAAGATACAAAGACAGACCATCCCAGTTGAATGCTGTCTTCCAAGAACA
GAAGAAAATGATCCAGGCCCAGGTAACTGACTTTTGGTTTGTTTTATTCTTTCCTTTGTTCCATAATAGATTTGTAGAAGCCTATAAACATCAATTTCAC
TAATATAAAAAGTATAAATTTCAAAAAGCAGGATCTGGAGAGAAGTAAGCTTAGTTTTTAAACTCAATATCATGCAAAATAGTAGGATAAGGAATATAAT
GTTCATAGCATTAACACTAAATTATGAATTTTGTGACACCATGCATGGCTGGAGGATCCTGTGGATTATATTAGCTGTCAGCTTGCATCTAATATCTCTG
ACAGCCAATGTCACAAGAAAATCATAATTTACATGGTATGTCCTGTTTTTGAAGATAAAACAGATTACTTCCTGGGGGTTGCCATTATTTCATGGCACTT
TGGTCTCAGGAAATTTCTTCAGTGGTTCTTCCTAGAGTTGATGTGGTGGATGGTGTCCAGAATAGCAGCCTTCTCATAAATTCAGATGCAGGTTTCCTGT
GGCTGTTTCTTGAAGGACTCCTTATATACTGTTACGGAATAGACTAAGCAAACAGTAAACACAGGGACCAACACAAGTTAATTTCAGCCTTGTGGCAGTC
TGGATTTAACTTGGAATAAAACCTAGACATCCTGGGAATATGGCAGGATTCCAGGACTTTCAAATGGTTCTCAATGAACAGATAGCTGAACTGGTGTTTG
AATATAGATTTGGAGACAGGGAGTTGAAAGTGATATTGTCTGAACAGGACTTGGATTGGAGTTTACAGATTTCCTTTAGACTTTCACCTTGTAGAAAATG
CCAAGTCCTTATTGTATAGTAAATAATTGAACAAAGGGAGTTTTGGCCTTTGTGTTCAAGCTAATGGAGGGTGAGCTCTGGGCTTCTGGAATATCTTGCT
AATGGTAGTGTCTTTGTTTGCTTGGGTCCTTTGGCCACTGGACAGCCTAAAAATACGAACTATGATAGATCTGTGATCTATGATAGGCCAGAAACTTCCA
GAACTAGAGGCTAAAGTTAAAACCTGACTTCTGGGAGGGTGTGGACCTAAGATCAGCCACATAGGTCATCTGTGATTGTGTCCCAGTAAAGTAAGAAAGT
ACACATATCAAAAAATAAATTTCGGCTGGGCGCGGTGGCTCATGGCTGTAATCCAGCACTTTGGGAGACCGAGGTGGGTGGATCACGAGGTCTGGAGATC
GAGACCATCCTGGCTCACACCGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTGGTCGGGTGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTCGGGA
GGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGACGGAAATTGCAGTGAGCCGAAATGGTGCCACTGCACTCCAGCCTGGGTGACAGAGAGACTCCATCT
C
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.