Detailed information on ENST00000597555

lncRNA-RNA interactions

Number of interactions: 43

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000394622 STEAP family member 2, metalloreductase protein coding ENST00000597555 600 269 UTR3 Trans
ENST00000423516 transketolase protein coding ENST00000597555 554 270 CDS Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000597555 536 272 noncoding Trans
ENST00000472528 transketolase nonsense mediated decay ENST00000597555 554 270 UTR3 Trans
ENST00000517408 antisense antisense ENST00000597555 515 272 noncoding Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000597555 627 268 CDS_UTR Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000597555 617 267 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000597555 624 286 UTR5 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000597555 629 268 UTR5 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000597555 625 266 UTR3 Trans
TCONS_00038233 protease, serine, 23 novel protein coding ENST00000597555 619 268 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000597555 640 268 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000597555 640 268 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000597555 640 268 UTR3 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000597555 640 268 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000597555 640 268 UTR3 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000597555 640 268 UTR3 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000597555 623 267 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000597555 619 269 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000597555 619 269 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000597555 619 269 UTR5 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000597555 623 267 UTR3 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding ENST00000597555 648 267 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding ENST00000597555 648 267 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding ENST00000597555 648 267 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000597555 604 270 UTR5 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000597555 602 271 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000597555 602 271 UTR5 Trans
TCONS_00173730 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000597555 602 271 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000597555 554 270 UTR5 Trans
TCONS_00180673 transketolase novel protein coding ENST00000597555 554 270 UTR5 Trans
TCONS_00187460 spermatogenesis associated 18 novel protein coding ENST00000597555 610 267 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000597555 616 267 UTR5 Trans
TCONS_00199451 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 novel protein coding ENST00000597555 653 269 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000597555 583 270 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000597555 619 267 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000597555 616 267 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000597555 633 262 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000597555 610 267 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000597555 610 267 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000597555 640 266 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000597555 640 266 UTR5 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000597555 634 276 UTR3 Trans

Sequence

>TCONS_00245543 (1600 nt)
GTTGAGGCCCTTCTTGTGTATCTGGAGAAAATAGAGGTTCTGACTCCTCAGGAGCAAAAAACATAACCTGAAGAGGGAGGAAGTGGATTTGGGGTTCACC
ATTTCTTGGGGCACACTTGATTGAAAACTGAGACTTCTGAAGAGAAGGCCAGAAGATACAAAGACAGACCATCCCAGTTGAATGCTGTCTTCCAAGAACA
GAAGAAAATGATCCAGGCCCAGGTAACTGACTTTTGGTTTGTTTTATTCTTTCCTTTGTTCCATAATAGATTTGTAGAAGCCTATAAACATCAATTTCAC
TAATATAAAAAGTATAAATTTCAAAAAGCAGGATCTGGAGAGAAGTAAGCTTAGTTTTTAAACTCAATATCATGCAAAATAGTAGGATAAGGAATATAAT
GTTCATAGCATTAACACTAAATTATGAATTTTGTGACACCATGCATGGCTGGAGGATCCTGTGGATTATATTAGCTGTCAGCTTGCATCTAATATCTCTG
ACAGCCAATGTCACAAGAAAATCATAATTTACATGGTATGTCCTGTTTTTGAAGATAAAACAGATTACTTCCTGGGGGTTGCCATTATTTCATGGCACTT
TGGTCTCAGGAAATTTCTTCAGTGGTTCTTCCTAGAGTTGATGTGGTGGATGGTGTCCAGAATAGCAGCCTTCTCATAAATTCAGATGCAGGTTTCCTGT
GGCTGTTTCTTGAAGGACTCCTTATATACTGTTACGGAATAGACTAAGCAAACAGTAAACACAGGGACCAACACAAGTTAATTTCAGCCTTGTGGCAGTC
TGGATTTAACTTGGAATAAAACCTAGACATCCTGGGAATATGGCAGGATTCCAGGACTTTCAAATGGTTCTCAATGAACAGATAGCTGAACTGGTGTTTG
AATATAGATTTGGAGACAGGGAGTTGAAAGTGATATTGTCTGAACAGGACTTGGATTGGAGTTTACAGATTTCCTTTAGACTTTCACCTTGTAGAAAATG
CCAAGTCCTTATTGTATAGTAAATAATTGAACAAAGGGAGTTTTGGCCTTTGTGTTCAAGCTAATGGAGGGTGAGCTCTGGGCTTCTGGAATATCTTGCT
AATGGTAGTGTCTTTGTTTGCTTGGGTCCTTTGGCCACTGGACAGCCTAAAAATACGAACTATGATAGATCTGTGATCTATGATAGGCCAGAAACTTCCA
GAACTAGAGGCTAAAGTTAAAACCTGACTTCTGGGAGGGTGTGGACCTAAGATCAGCCACATAGGTCATCTGTGATTGTGTCCCAGTAAAGTAAGAAAGT
ACACATATCAAAAAATAAATTTCGGCTGGGCGCGGTGGCTCATGGCTGTAATCCAGCACTTTGGGAGACCGAGGTGGGTGGATCACGAGGTCTGGAGATC
GAGACCATCCTGGCTCACACCGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTGGTCGGGTGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTCGGGA
GGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGACGGAAATTGCAGTGAGCCGAAATGGTGCCACTGCACTCCAGCCTGGGTGACAGAGAGACTCCATCT
C

Expression



Full and truncated open reading frames discovered in TCONS_00245543

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.