Detailed information on ENST00000598112

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000598112 515 313 UTR3 Trans
ENST00000513143 podoplanin protein coding ENST00000598112 529 303 UTR5 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000598112 525 304 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000598112 553 301 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000598112 519 314 UTR3 Trans
TCONS_00175015 copine IV novel protein coding ENST00000598112 533 307 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000598112 531 298 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000598112 586 331 UTR3 Trans

Sequence

>TCONS_00219453 (1472 nt)
TGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTACCACCATGCCTAATTTTTTTTTTTTTTTTTTAGGAGGGATGGGGTTTTGCCATCTTGGCCA
GGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCACCTGCCTCAGCCTCCCAGAGTGCTAGGATTATAGGCATGAGCCACTGTGCCCGGCCACGGGCTGGA
CTCTTTAGCCAGCCCCAAATCCCAGCCACATGACTTTGGCTGGGTCACTCCTTTGAGGCACGAAGACCACGTCACTTGGTTGCATGCTTGGGTGCCCAGT
GGGACAGGTATGAGAAGACCCACTCAAGAGTGGTGAGAAAGAAGGCTGGCTAGGAACCCAGGTGGGGCAGGTTGTCTGCACGTTATGGCTATTATGAGCA
GTGCTGCTATGGACATTTACATGTACGCACGTCTTTCTGTGAGTATATGTTTTCAGTTTTCTTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAGA
GTCTCAGTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAACCTCCACCTCCTGGATTCAAGTGGTTCTCCTACCTCAGCCTCCCA
AATAGCTGAGACTCCAGGCATCCACCACCACACCTCCCTAATTTTTTGTATTTTTAGTACAGACAGGGTTTTGCCATGTTGGCTACGCTGGTCTCAAACT
CCTGAGCTCAAGTGACCCGCCTACCTCAGCCTTTCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACGCAGCCATGTTTTCAGTTTTCTTGAGGGAGA
TTCCTAGGAGTAGAATTGCTGGGCTGTGTGGTAACTTCCAGGCCTCCTTAAAGCTTTAGCCTGGACTGGGTAGAGCATGGTTTCCACTGCATTCTCTTAG
TCACAGTGAGTTGCAGGTTCACCCCAGCGTCAGTGGCGGGCGGGAAGTGGGGATGACACAAGGACCTGAGTGTCCAAGGGGGCTTCATGGAGCCCTCATG
TGAAGTCCCCAGCATGGACCCTGACACATCGTAGGTCCTCAACAAATGTCACTCCCTGTTGTCACTCTGTTTAGTACTAAGAATAATGATATAAAACTGG
GACAGTAAGGAAAACACAAACTGTTGGGACCTATATCTGAATCTATTAGTCTGCCTAATAGAAAAGCCACCATCAGGATTTTGGAGATTACAAGCTCACT
TTAGATTAGCCATACTGGAGTCAGCCCTGGAGGCTCCCAGAGATCAGAACAATCCCAGCGCTTGACAGGATGGCTGGGAAACAATACATATGAATGCCGG
AAAATGCAGAACTAATCTAGGAAAAAGTGTAAGAAGAAAATAAACATCATCTGTCATTCTATCTATCAGAGATAACTGCTGTCAATATTTTGGTTTCCTT
CCAATATTTTTTCTATTCACTCTGTGCATAAGTATGTATATTTTAATAAAAGTATAATTAAGATCACAATGTA

Expression



Full and truncated open reading frames discovered in TCONS_00219453

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.