Detailed information on ENST00000601034

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000601034 522 281 noncoding Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000601034 548 279 UTR5 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000601034 554 284 UTR3 Trans
TCONS_00053501 anoctamin 4 novel protein coding ENST00000601034 543 310 UTR3 Trans
TCONS_00053502 anoctamin 4 novel protein coding ENST00000601034 543 310 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding ENST00000601034 543 310 UTR3 Trans
TCONS_00053521 anoctamin 4 novel protein coding ENST00000601034 543 310 UTR3 Trans
TCONS_00053527 anoctamin 4 novel protein coding ENST00000601034 543 310 UTR3 Trans
TCONS_00053528 anoctamin 4 novel protein coding ENST00000601034 543 310 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000601034 587 312 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000601034 506 289 UTR3 Trans

Sequence

>TCONS_00118919 (3214 nt)
GGGAGGGAAGGCACTCTCTGTCAAGCTGCTGTCACCTTACCTGAAGTAAGGAGTCCACGCCTGCATGTCCGAGGAAAACAGTTTTCTCAAACACATTAGT
TGAAAAACTGAAGACGCTGCCTAAAATACAAGCTGAGTTAGAGACAGCCCTTGTAAGACTAGATGGAATCTCATTCTGTAGCCTAGGCTGGAGTGCAGTG
GCACAATCTGGTCACTACAACCTCTGCCTCCCAGGTTCAAGCAATCCTTGTGTCTCAGCCTTCCAAGTAGCTGGGATTACAGGCATGCACCACCACACTC
AGCTAATTTTTGTGTTTTTAGTAGAGATAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTTGACTCAAGTGACCCACCCTCAGCCTCCCAAAG
TGCTGGGAGCCACCGCGTGAGCCACAGTGCCCAGTTGACAATTTCTGCATTAATCCACAGAACACATAAAAGCACTGTGGAAGTGGCAACAGGGAAGGTG
AGAAGAGGATTATCAAAGACATTGTGATGATAGAATGGACAGGACTTGGTGAACTGAGTTGATGCAGGCAGAATCATGATATTGTGTGATTAAAGCCATC
TTGTGTCATATAAGGTGAATATCATCAAGCTACTGATAATTGTAAATTCTAATAAGATGTATAACTCATTTCTAAAGGACAAATGGTGTTTATTCAGTCA
TTTGCTTAACAAATATTTATTGAATGTCTACTGTGTGTAGGAGCTGGGAATGTAGGAATGAATAAAACGGGAAATAATGCCTGTCCTTATGAAGTTTACA
TTCTAGTGGGAGAGGTAGACAAGTATAATATGTGGTATATTCACGTTAAGTGTTAAAGAGGAAGAATAAAGCAGGGAAAGGAAATGAAGTGCTGCAGAGG
GAGGTTTGGAGTTTAAGACATGGAGAACGGAAAGGCGTCACTGAGGGTGTCAATGATGTTTCAGTAGAGAGTGGACAGAGCTGTGCAGATACCTCAGGAA
AACCCAATTTTATCTATTTATTTTACTGGAGTGCTGTAGTCTGAATGTTTGTGTCCTATCAAAATTCATATGTTCAAATCCTGACCCCCAAGGTGATGAT
ATTAAGAGGCAGGACCTTTGGGAGGTGATTAGGCAGAGACCTCATGAATGAGATTAGTGCCTTTATAAAAGAGGCCTGGGGGAGCTCAGTCACATCATGT
GATGACAGAGCAAGAAGGCACCATCTACAAACCAGGTCCTCACCAGACAGCAAATCTGCCGGCACCTTGATCTTCGACTTCCTAGTCTCCAGAAGTATGA
GAAATTTCTGTTTTTTATAAACAATCTGGTTTATGGTTTTTTGTTTTGTTTTGTTTTGTTTTTGACAGAGTGTCGCTCTGTCATCTGGGCCAGAATGCAG
TGGCGCGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCTGCCATGAC
GCCCAGCTAATTTTCTCGTCTTTTTAGTAAAGACGGGGTTTCACCATGTTGGTGAGGCTGGTTTCGAACTCCTGACCTCAAGTGATCCACCCGCCTTGGC
CTCCCAAAGTGCTAGGATTACTGGCGTGAGCCACCACGCCTGGCCAGTTTTATGGTATTCTGTAATTGCAGCCCAAACTGACTAAGACGTGAAGTTTAGG
TAAACATTTGCAGTTTGCTATGCTGATATTGAAGTATTATCTGTTGGTAAATATTCTTTGCTGATACTTAATAAGTATTCTTATTAATAACAAGTATTAA
TAATATGTATTCCTCACTAATGCTTAATACAAATCCTTACTAATAGCAGTATTAGTATTAATTAGTATTAATCAGTATTCTTTGCCAATAAGGGTTCTGA
CAGAAAATCAGTTGTTCATTAAATATTATTGAGATACTTCTTGATCTTATAGTAGACAGGTACTGTTTTAGATTCTGGGGATTCAGTCGTAACTGAGATA
GATGTAATCCCTACCCTCAAAGGGTTGCCAGAGAAAACACAGGACTCAATTGAATTGGAATTTCAGATAAAAAACACATAATTTTTAGTATAAATATGTT
TATGTGATACTTATACTGAATATACCATGTGATATTTGGAATATACTTATACTAAAATGTACACTAAATGTGTTGATAACCTGAAATCCAAATTTAACTG
GGCTTCCTATGTTTTTATTTGCTGAGTCTGGCAATTCTATGCCCTCACTACGCTTATAAGCTAACATGCTGGAAGCAGAGATTTGTAAATACAAATAGCA
TACAGTGAACAATGCTGTATAACCTGGGGAGCCATAAATTAGAAGGCACTGGGACCCTAAATGTATGGAGAAAAACTGTCAGCCAACCAGGAACATCCAC
CCTTAAAGCAAGAAATAAACTTCTGTCGTATTTGAGCCATTATGTTTTGGAACCATTTGTGCCATGGTCTATTTGTTATGCCAGCTTAACCTAACTAACA
ATATGTCCTGAAATCTACTATCATTTCCAAATTTACTACAGAATCAAAAGTTTTAATATAATATACCAACAACTAATAAAATATATGTAAATAAAGGCAA
CAGGAAGATGGGGCAAACCCTAAAAATGCTTATGCTGTAGTCATCATTCTATTAACAATATAGCTTTAAACCTAAGTATTTTCAAAATGGTCATGAGGGA
CATCAGATCATTTTAGGAAAATTACATAACTCGATGGCTTCCCTAAGCAACTAATACTACACATTTATACATTATTCCTGGCGATTAAAACATTTTCTTT
CAGCTAATTATCGAATGTAAAGACAGGTTTTGTAGGCTCTAAAATTTTAATTAAGACATGGTTTTTGCCTTCAGAAAGTATATGGCCTAATAGAGGAAAT
AAGGATACAAAATACTAGCAGAATATGATCAGTGCCAAAAGATATGTGCAAATTATATCTCTAATTGGAGTGAGAAATTCATTCAGATTAGAGGGGATTA
AAAAGAAGCTGAATGAGGAAGCATTTTTTCCCTCAAAGCTTTACAATTTTCTGTCTTTTGAATTTAAAAGTAGAGCTTATTGTCAAGAATTTGCAAAATA
CAAATAGAGAAAAACAAATATCACTTCTAATCTCACTACCCAGAGATAGCCACTAATAACATTTTTGTATGTATTCCCTCCTTTATGTTTTAAATAAAAT
TGGGGTCTTATTATC

Expression



Full and truncated open reading frames discovered in TCONS_00118919

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.