Detailed information on ENST00000601390

lncRNA-RNA interactions

Number of interactions: 59

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000601390 528 296 UTR3 Trans
ENST00000332592 DCN1, defective in cullin neddylation 1, domain containing 2 protein coding ENST00000601390 668 292 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding ENST00000601390 593 304 UTR3 Trans
ENST00000375403 DCN1, defective in cullin neddylation 1, domain containing 2 nonsense mediated decay ENST00000601390 668 292 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000601390 528 296 UTR3 Trans
ENST00000399322 diacylglycerol kinase, beta 90kDa protein coding ENST00000601390 533 307 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000601390 591 282 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000601390 527 301 UTR5 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000601390 594 299 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000601390 528 269 noncoding Trans
ENST00000612932 suppressor of cytokine signaling 7 protein coding ENST00000601390 508 295 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000601390 617 279 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000601390 617 279 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000601390 635 280 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000601390 614 288 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000601390 605 278 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000601390 605 278 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000601390 605 278 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000601390 605 278 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000601390 643 290 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000601390 581 293 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000601390 629 308 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000601390 629 308 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000601390 616 302 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000601390 608 311 UTR5 Trans
TCONS_00051246 sterol O-acyltransferase 2 novel protein coding ENST00000601390 610 283 UTR5 Trans
TCONS_00102928 suppressor of cytokine signaling 7 novel protein coding ENST00000601390 508 295 UTR3 Trans
TCONS_00102930 suppressor of cytokine signaling 7 novel protein coding ENST00000601390 508 295 UTR3 Trans
TCONS_00102933 suppressor of cytokine signaling 7 novel protein coding ENST00000601390 508 295 UTR3 Trans
TCONS_00104960 A kinase (PRKA) anchor protein 1 novel protein coding ENST00000601390 556 304 UTR3 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000601390 605 299 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000601390 565 299 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000601390 629 286 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000601390 565 299 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000601390 565 299 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000601390 565 299 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000601390 629 286 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000601390 565 299 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000601390 612 305 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000601390 612 305 UTR5 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000601390 541 307 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000601390 541 307 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000601390 576 299 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000601390 620 306 noncoding Trans
TCONS_00175015 copine IV novel protein coding ENST00000601390 519 307 UTR3 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000601390 615 285 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000601390 622 284 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000601390 615 286 UTR5 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000601390 538 290 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000601390 628 306 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000601390 634 301 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000601390 634 301 UTR3 Trans
TCONS_00213775 LYR motif containing 4 novel noncoding ENST00000601390 604 296 noncoding Trans
TCONS_00226586 diacylglycerol kinase, beta 90kDa novel protein coding ENST00000601390 523 301 UTR3 Trans
TCONS_00226588 diacylglycerol kinase, beta 90kDa novel protein coding ENST00000601390 523 301 UTR3 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000601390 653 307 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000601390 646 300 UTR5 Trans
TCONS_00235292 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000601390 596 305 UTR3 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000601390 600 287 UTR5 Trans

Sequence

>TCONS_00247297 (2388 nt)
CTTTTCCGGTTGCGGCGCCGCGCGGTGAGGTTGTCTAGTCCACGCTCGGAGCCATGCCGTCCAAGGGCCCGCTGCAGTCTGTGCAGGTCTTCGGACGCAA
GAAGACAGCGACAGCTGTGGCGCACTGCAAACGCGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAGTAC
AAGGTGCTGGGATCCGGCACCGGCGTTGAGTGGATGGAGGACTCTTGGAGACAGAGATGTTGTAGCTCTTGAAAGCTGGGGGGGCTGGCATCAGCAACGG
GATGTTTAGAAGTTGTGTTGGGTGTAGAACAGTGGGGTATTTGGCAATAGAGCTGGGCTTGGGGTTCAGAAGATGTAAAAGCTGAGATGGGGTTGTTGAA
GATTAAGGGTTTGCTTTGAGAACTGGGATGTTAGGAAGCTCACCTCACTGGGGCGGGGGGACCCAAAGGGTGAAGGGACACCGACTATTTTTTATTTTAT
TTATTTGTTTTGAGAGGGAGTCTCGCTGTGTCGCCCAGGCTGGAGTGTAGTGGCGCGATCTCGGATCACTGCAACCTTCGCCTCCCGGGTTAAAGCGATT
CTCCTGCCTCAGCCTCTTGAGTAGCTGAGATTACAGGCATGCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATATTGG
CCAGAGTGGTCTCGAACTCATTACCTCAGGTGATCCACCAGCCTCGGCCTCCCGAAGTGCTGGGATTGCAGGCGTCAGCCACCGTGTGCGGCCGAATTTG
GGTCTGTTTAAATGCTTGCTTGTAAAAGGGGTTCCTCTGTTCCCTTTTTGGGACTCTCAATTTCTTTGGCTCAGAATGGAAAGAAACCAGAGTCTGATTT
CTGCCCCTTCTGAACTCTACTACTTTTAAAAGAAAGAATATCTACATTGCAGGGTCAGTTAAAAAAATTTTTTTTGAGTTATAAGGTTCTTTTTTAAAAA
CAGTATCTTGCTGTCACCTACCCTGGAGTGCAATAGCACAATCCTAATGAACTGCAGCCTTAAACTCCTGAGTTGGAGATCCTCCCACCTCAGCCTTTCG
GTTGCCAAGACTACAGGCACATCACCACGCCTGGCTCATTTGAGAAATATTTTTCTGTAGACGTGGGGTCTCACTTTATTGCCCAGGCTGGTCCTTGGTC
TCATGTGATCCTTCTGCCTGGACTGGGATTACAGGTGTGATCACCATGCCTGGCCTAGAATTTAATAAAAATTCTGAGATTTCCTTTGTGTAGCAGATGT
TGAATGTTACTGTTATTGGCTGTCACTGTATTTGAAGGATTTGTATGTGTACCCTCTGTTGAGTTTTGGGGACATAGCAGTGATCCAGATGACTTAAGGT
CTTGCCTTCATGGACCTGCCAGCCTAGTTGGGGAGAAGGACTGGGCCCAATACCAGAAGCTGATCCAAAGTGGTCAGAACTGGGGAAGGAGACCTGTGAG
CTGAAAGCAGGTAAAGGAAGTATCCAGACAGAGGCACTGGTAAAAGACCTGGAGCTGGGAAGGGTCTAGGGACCAGGGACAGGTTGTACTGTAATTCTGG
AAACCTGTGAGGCTCAAAGAAAGGGCAGAGAGCTCAGGTGGGAAATAGAAAAGGCACCTGAACAGTCCAGGGATGGCTTTCGACTACTTGAAACAGCCTT
GGGAGTTTCAGAAGCTATTGGAATGCTCCTTACTGTTCAGCCTTCTAAGAACCAGTCTTAGAGGTAGGGTGTCTGAGGTCCAGTGAGGGACACAAGTAGG
AGGGAGCCCAGATCTTGTTCCCTTTACCTTGCCTATATTTCTTAACACCACTTCAGCAGTCTCATATCTGGCTTTTTTGACTTTCCTCTTCTCTGGGTCT
GTAGAGGGCCTTGGAGTGACACCCTGACCCCCATCCACTAGTACTTGAAGGCCAGTGGTGGCAGAAGCCACAGAAACAAGAAGCCCAGTGAGATGGCTAA
GCTGCCCAGCATGTAACTTAAATCCCTGTTCATTCCCCATTCCTTTAGCTGCTGGAGCCAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTAGACA
TCCGTGTCCGTGTAAAGGGTGGTGGTCACGTGGCCCAGATTTATGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGA
TGAGGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAGCTGACCCTCGTCGCTGCGAGTCCAAAAAGTTTGGAGGC
CCTGGTGCCCGCGCTCGCTACCAGAAATCCTACCGATAAGCCCATCGTGACTCAAAACTCACTTGTATAATAAACAGTTTTTGAGGGAT

Expression



Full and truncated open reading frames discovered in TCONS_00247297

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.