Detailed information on ENST00000602172

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000602172 514 251 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000602172 606 284 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000602172 576 286 UTR5 Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000602172 530 258 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000602172 514 251 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000602172 542 255 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000602172 542 255 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000602172 644 278 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000602172 613 279 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000602172 603 277 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000602172 621 278 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000602172 630 281 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000602172 629 279 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000602172 629 279 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000602172 629 279 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000602172 604 262 UTR5 Trans

Sequence

>TCONS_00252827 (1968 nt)
ACTTTGTCGTACTCCTTCCTTGCTGACTAAGAGGAACAGAACACAGAGCAGCCTGGCGGTGTCCTACCAACAAGCCTCCGTTTCTCCTTCCTGTACACTA
GGGCTCCTGAAACTCACCTGATGAAGTCTCCGTCTGTCACCCAGGCTGGAGTGTAATGGAGCAATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAA
GCGATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGAATTATAGGTGCATGCCACCACGCTCGGCTAATTTTTTGTATTTTTAGTAAAGACGGAGTTTCACC
ATGTTGGTCAGGATGGTCTCCGTCTCTTGACCTCGAGATCAGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCTT
GGTTTCTAAATACTATTTTGAAGTATCTGTGGAGAAATGGTTACTTCGAGGGCTGGGGCAGGAATATATAAGATAACATTGGAACAAATTCTGACGCCAG
AACATGAAGAAATATTTGAAAAAGGATGGGGCATATTGACTGAACACAGAAGACAAACATGCATGACCTCAGCCTAATCGTGAGAAAACATCAAAGAAAT
CCAAATTGATAAACATTCTGTAAAATAATTGGCCATGCTCAGCAAAAGTGTCACAATCACAAAAGACAAGGGAAGAATAAGAAACGGTCACAGCCTGGAG
GAATCTAAGGACATAACAACTGAGTGCAATGTGAGATCCTCGATTCGATCTTGGAGAAGAAAGAGGACGTTAAGAGAAATATTGACAAAATTCAAATAAG
GTCTGCACATTAGGTAATGGTAAGATACGTTGACATCAATTTCCTGGTTGGATACTTGTATTACATATACTATTATGTATATAATTATTATATTACAATT
ACATATACAGTTGTATATTATATATAATACAATAAATGTATATATATGATTATAATACAATAAATGTATATATACAGTTTTATATATAACAACTATTATA
CATATAATACAATTATATATATAGCTAACATCAGGATAGGCTGGTTGAGGATTTATATGAATCTTTGCTAATTTTGCATGTTTAAAATTATTTCAACATA
AAAAAATTATATGGGTCATGTAGTTTTTTGTGCAGTTTAATTCTAGGCACCATAGTTTCTGTTTTAATGGGTGTATTTTCTTCTTTCAAGGAATTGGGAT
AGTCTGTTGTATTAAAAACCTATTCATTTTTGTACATTAAGATTCTTCTGGCCAGGCGCAATGGCTCAAGCCTATAATCCCAGCACTTGGGAACCTGAGG
CAGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCATGTCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCAGGCATGGTG
GCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGAGGAGACTCACTAGAACTCAGGAAGCAGAGGTTGCAGTGAGCCAAGACTGCGCCACTGCACT
CTGGCCTAAGCAACAGAGGGAGACTCCATCTCAAAAAAAAAAAAAGATTATTTCTCTAACTTACTGGTTTATCTTTTATAGCTTATTTCAGGTGATTTGT
TGTGTTTGTCTATAGAGTAAAATAACATGTCTAATGAGTTATAATTTAATGTCCTTCCATTCAATCACTGTATTTCAAATTTATTCCAATATTTTGGAAT
AAGCTTCCAATATTTTAACTTAAATAGGGAAGGTCATACTTGGTATTTTCCTGACCTCAGCTGGAATGCCTTCATAGTGTTCACATGAACACATTTGGCC
TGAGAGAGACTTATTATGCCGAGAATGTGTGTAACCCTTTTTACTTAGGAATTGTGGGTGGAGTTTTTCCCCCCGCCCAAGAATGATTGTTAATTTCCGT
CCATCATTTTCCTTTGATTGTTCTTCATCTCGAAAACAAATAATAAAATAATAAAATAAATAAATAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.