Detailed information on ENST00000602591

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000602591 859 804 noncoding Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000602591 769 652 noncoding Trans
TCONS_00156217 antisense novel protein coding ENST00000602591 1134 1174 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000602591 629 934 UTR3 Trans

Sequence

>TCONS_00194686 (1975 nt)
CACAGTTCATGGTAAAGCCCAAGACTGTACCTGCCCATCCACTGCCTTTTCCATGTATCCTGGAACTGAGCATAGACCTCTTCCCAGGCAGAGCTGACAG
CAAGTAAAGGAGATCATAATCAGGGGACCAAACAACTTTGTCTAAAGTGTGAATGTCACCTAAGGAGAAGCTGTGAGATCAGAAGGGTGGGGCAGAGGAG
CAGACACCATGAGGGAGAGTCCTTGGGGGTACATCTGCCAGACTGACACTGTCTGGCCTGGGCAGTGGAGGGGCTAGCAGGAACCACAGGTACTGGTGGT
GTGGCTACTACCGTTACAACTGCCTGTGCTTGGACATGGACCCTCTGCAATATGCGGCAGTTTCATTCATTGCCCCCTACATTCTACACCAAGTAGAAAT
GGAAGGCAATTGGATACTTCACAGACAAGATCTAAGTGGAGAAGGAATGCGTCCTGTGGCTGCAGAGATCCTTGGAGCTTGGAGGGGAGAGCTTGAGCCC
CACTGATGATGACCTCCCACAGCTCGCCAACTCAGCCCTCCCTAAGTCCCCATCGGGGGCCAATTCTCACTCTGGGGTTGGGGGGACTCCACCATAGCTC
ATCCATCATAGGGATGTTGGTATCTACTGTGGGTTGGGTAGGGCCGATGTGCTGAGGATGGCTCCCCCACAAGCAAGAGATGTGGATTTGGGGAGCTTCC
CATCTTGTGTTGAAGGAACATAACTCAGAATAATAAGAGCCAACTATAACAAACCCACAGCCAACATCATACTGAATGGGCAAAAGCTGCAGGCATTCCC
CTTGAAAAGTGGCACAGGATAAGGAAGCCCTTTCTCACCACTCCTATTCAATATAGTGTTGAAAGTCCTGATCACAGCAGTCAGGCAACAGAAATAATAA
AGGGCATCCAAATAGGAAGAGAGGAAGTCAAACTATCCTTGTTTGCAGACAGTATGATTCTATATCTAGAAAACCCCATAGCCTCAGCCCAAAAGGTCCT
TCATCTGATAATTTCAGCAAAGTTTCAGGAGACAAAATCAGTGTACAAAAATCACTAACATTCCTATACACAGTCGCCAAGCCAAGAGCCAAATCAGGAG
CACAATCCCATTCATAATTGCCACAAAAAAGAATAAAATACCCAGGAATGCAGCTAACCAAGGAAGTAAAGGATCTCTACAATGAGAATCACAAACGCTG
CTCAAAGAAATCAGAGATGACACAAACAAATGGAAAAACTTTCCATGCTCATGGCTAGGAAGAATCAATATCATTAAAGTGGCCATACTACCCAAAGCAA
TTTATAGATTCAATGCTATTCCTATCAAACTATCAATTACATTTTTCACAGAACTAGAAAAAACTTAAAATTCATATGGAACCAAAAAGCCTGAGTAGTC
AAGGCAATCCTAAACAAAAAGAACAAAGGTGGAGGCATCACATTACCTAACTTCAAACTACAGGGCTACCATGACCAAAACAGCATGGTACTGGTACAAA
AGCAGACACACAGACCAGTGGGACAGAATAGAGAGCCCAAAAATAAGGCCACAAACCTACAGCCATCTGATCTTCAACAAAGTTGACAAAAACAAGCAAT
GGGGAAAGGTCTCCCTATTCAATAAATGGTGCTGGGATAACTGGCTGGCCATATGCAGAAGATCGTAACTGGACCCCTTTTACTATGTACAAAAATTAAG
ATGGTTTAAAGAGTTAAAACCCAAAATTATAAAAATCCTGAAGATAACTTAGGCAATACCATTCTGGACATAGGAACTGGCAAATATTTCATGATGAAGA
CACCAAAAGCAATTGTAACAAAAGCAAAAATGGACAAATTGGATTTAAGAGCTTTTTCATAGCAAAATAAACAACAGGGCAGACAATCTACCAAATGACA
GAAAATTTTTGCAAACTATGCATCTGACAAGGGGCTAATATCTAGCATCTATAAGGAATTTAAACACAGTTACAGG

Expression



Full and truncated open reading frames discovered in TCONS_00194686

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.