Detailed information on ENST00000602909

lncRNA-RNA interactions

Number of interactions: 129

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262461 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 protein coding ENST00000602909 543 308 UTR3 Trans
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000602909 623 284 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000602909 665 304 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000602909 555 251 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000602909 619 291 UTR3 Trans
ENST00000353231 C-type lectin domain family 7, member A protein coding ENST00000602909 533 309 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000602909 631 302 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000602909 619 296 UTR3 Trans
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000602909 558 306 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000602909 558 306 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000602909 541 307 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000602909 703 304 CDS Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000602909 531 298 CDS Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000602909 616 295 noncoding Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000602909 584 291 noncoding Trans
ENST00000527227 NAD synthetase 1 retained intron ENST00000602909 506 258 noncoding Trans
ENST00000530055 NAD synthetase 1 protein coding ENST00000602909 506 258 UTR5 Trans
ENST00000536180 vacuole membrane protein 1 protein coding ENST00000602909 504 232 CDS Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000602909 601 296 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000602909 548 296 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000602909 689 276 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000602909 557 299 UTR3 Trans
TCONS_00013935 platelet-activating factor receptor novel protein coding ENST00000602909 605 309 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000602909 657 290 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000602909 657 290 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000602909 620 257 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000602909 688 286 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000602909 602 306 UTR3 Trans
TCONS_00032153 long intergenic non-protein coding RNA 959 novel noncoding ENST00000602909 609 275 noncoding Trans
TCONS_00037379 NAD synthetase 1 novel protein coding ENST00000602909 506 258 UTR5 Trans
TCONS_00037380 NAD synthetase 1 novel protein coding ENST00000602909 506 258 UTR5 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000602909 671 306 UTR5 Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000602909 601 296 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000602909 604 292 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000602909 604 292 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000602909 605 312 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000602909 660 286 UTR5 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000602909 654 297 UTR5 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000602909 640 293 UTR5 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000602909 623 284 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000602909 623 284 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000602909 623 284 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000602909 606 259 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000602909 631 302 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000602909 619 296 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000602909 631 302 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000602909 619 296 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000602909 631 302 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000602909 619 296 UTR3 Trans
TCONS_00099311 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000602909 626 288 UTR5 Trans
TCONS_00099312 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000602909 626 288 UTR5 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000602909 631 307 UTR5 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000602909 612 297 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000602909 631 307 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000602909 612 297 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000602909 615 287 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000602909 548 296 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000602909 689 276 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000602909 644 264 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000602909 644 264 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000602909 615 287 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000602909 636 291 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000602909 636 291 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000602909 636 291 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000602909 636 291 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000602909 636 291 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000602909 636 291 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000602909 636 291 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000602909 543 295 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000602909 616 290 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000602909 677 297 UTR5 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000602909 637 286 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000602909 637 286 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000602909 625 291 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000602909 621 314 noncoding Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000602909 629 299 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding ENST00000602909 682 289 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000602909 609 277 UTR5 Trans
TCONS_00142538 antisense novel protein coding ENST00000602909 623 308 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000602909 684 296 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000602909 638 276 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000602909 615 276 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000602909 615 276 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000602909 665 304 UTR3 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding ENST00000602909 615 298 UTR5 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding ENST00000602909 617 262 UTR5 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000602909 632 296 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000602909 635 292 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000602909 595 272 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000602909 595 272 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000602909 643 283 noncoding Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000602909 633 287 UTR5 Trans
TCONS_00174508 calcium-sensing receptor novel protein coding ENST00000602909 604 298 UTR5 Trans
TCONS_00174508 calcium-sensing receptor novel protein coding ENST00000602909 628 296 UTR5 Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000602909 675 303 UTR5 Trans
TCONS_00180671 transketolase novel protein coding ENST00000602909 603 283 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000602909 603 283 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000602909 620 311 UTR5 Trans
TCONS_00190276 transmembrane protein 144 novel protein coding ENST00000602909 625 288 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000602909 616 291 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000602909 616 291 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000602909 609 288 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000602909 627 288 UTR5 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000602909 674 293 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000602909 674 293 UTR3 Trans
TCONS_00215909 O-acyl-ADP-ribose deacylase 1 novel protein coding ENST00000602909 636 301 UTR3 Trans
TCONS_00216783 KH homology domain containing 1 novel noncoding ENST00000602909 603 276 noncoding Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000602909 642 296 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000602909 636 287 UTR5 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000602909 627 288 UTR3 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000602909 620 266 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000602909 620 266 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000602909 610 302 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000602909 637 291 CDS_UTR Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000602909 640 310 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000602909 619 291 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000602909 619 291 UTR5 Trans
TCONS_00244728 chromosome 9 open reading frame 91 novel protein coding ENST00000602909 611 288 UTR5 Trans
TCONS_00246554 endoplasmic reticulum metallopeptidase 1 novel protein coding ENST00000602909 659 295 UTR3 Trans
TCONS_00249090 transmembrane protein 245 novel protein coding ENST00000602909 650 293 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000602909 619 291 UTR3 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding ENST00000602909 550 314 UTR3 Trans

Sequence

>TCONS_00253055 (2136 nt)
ATAAATGAAATTGGGCCAGGCGTGGTGGCTCACCCTTGTAATCCCAGCGCTTTCAGAGGCCGAGGCAGGCGGATCACCTGAGGTTGGGAGTTTGAGACCA
TCCTGACCAACATGGAGAAACCCCGTCTCTACTTAAAATACAAAATTAGCGGGGCGTGGTGGCGCATGCCTGTAATCTCAGCTACTCTGGAGGCTGAGGC
AGGAGAATTGCTTGAACCTGGGAGGCAGAGGGGGTGGCGAGCCAAGATTGCACCATTGTACTCCAGCCTAGGCAACAAGAGCGAAACTGTCTCAAAAAAA
AAAAAAAAAAAAAAGTGAAATTGCTTACCCAAATCTACAGTTAACTTTCGTTTTTTAATGCTTGATGAATTTGCATGTCATTCTTGGGCAGTGGCCATGC
TGTCTTCTCTGTATTGTTCCAATTTGGGTATATGTGCTGCCAAAGTGAGTACTGCAGAATTATTTCTTGAGAGAGGCACTTACATGTGCTGATTGGCACT
AAAGCAGTGGAATGGGAAGAAGAGACTTGGAAGGCAGCCCAGACGATCCAGGCGTGTGCTAGATGGCAACTGAGGAGCACGGTGCTACCATCTTTACTGG
TGTTTCCACCTATGTGCCAGGGGTTCTGTGAGCTACCTGAGAATACTGAAGTATATAATGCTCTGGCACATAGTTAGGCACTAATCAGTGGTATTTATCA
AGGTGATTAAAAGCAGATTTAAAAAGCAGCTCACAGTTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCA
GAGGTCAGAAGTTCGAGACCAGCCTGGCCAACGTTGTGAAACCCTGTCTCTACTAAAAATACAAAAATTGGCCACGTGTGGTGGCGGGCACCTGTAATCC
TAGCTACTTGGGAAGCTGAGACAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCATGCCATTGCACTCCAGCCTGGGCAACAA
GAGCGAGACTCCATCTTGAAAAAAAATAAAATAATAAAAAGCAGCTCATACTAGGGAACTTGGTAAAGCAACCTCATGCTGTTGTAGGTTGAAAGCCTGG
TCAGCTATTCTGCAAGACAGTCAAAAATTGTTTACAGGGCTGGACAGCATATTGCTATTGAAAAATAGCTATTAGGAGACCTTGCACAATTTGTGAAACA
TTGTTAGGCTCATTGTACTGTGTAAAATCAGGAAAGAATTTGGGAACATACTGATACAACAAAAAGATAGGTTGTCAAACCCTCACTTCACCAGAAAGCT
AAATTAACCAGATAAGTCTTTCTGAAAGTTTTAGTGTCTTAGTTTGTTCCTGCGCTGTAACAGAATACCTTAGACTGGGTAACCTATAAATAATAGGAAT
TTATTTCTCACAGTTTTGGAGGCTGGCAAATGCAAGATCCAGGTGCTGGTACGTTCAGTGTCTGGCAAGGGCGGCTTTCTGGTCCAAGATGGTGCCTTTT
TTTCTGCATCTTCCATAGGGAATGAACACTCCTTATGGTAGAAGGGATGGAAGGACCAGGCTTTTTTTTTTTTTTTTTTTGGATACAGCAGGATCTTGCT
CTGTCGCCCAGGCTGGAGTGCAGTGGCATGATTAAGGTTCACTGCAGCCTCAATCTCCCACTCTCCAGCGATCATCCCACCTCAGCCTCTTGGATAGCTG
GGACCACAGGCACGAGCTACCATGCCTGGCTAATTTATTTTTTGTAGAGACGGGGTTTCGCCATGTTGCCCAGGCTGGTCTGGAATTTCTGACCTCTAGC
AGTCCACCTGTTTCCGCCTCCCAAATGCTGAGATTAGAGGCATGAGTCACTGCACCCAGCCCGCAGCCTCTTTTATAAGGGCATTAATCCCCTTCATGAG
GGATATTCTCTCATGACTTAATCACCTGCCAAAGACCCCACCTCTTAATACTACATCAGTGATGGGTTCAATGTATCAATTGGGTGGGAGGGGGCACATT
CAGACCATAGCATCTAGTCATTCTGGTTTTATTAAGATTTATTAGACCTGAGGCATGAAAAATAGCATACTGGATGGGACTTCAGCATCGATGAGTTGCC
TTAGTAATACTGTTAATAAAAAGCACTAAATATGCCA

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.