Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000418314 | mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase | protein coding | ENST00000603716 | 523 | 272 | CDS | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000603716 | 602 | 266 | CDS | Trans | |
TCONS_00075813 | forkhead box N3 | novel protein coding | ENST00000603716 | 600 | 271 | UTR5 | Trans | |
TCONS_00075827 | forkhead box N3 | novel protein coding | ENST00000603716 | 600 | 271 | UTR3 | Trans |
>TCONS_00075827 (631 nt)
CACAACCAAGGGGAGAAAACCTGTGGTGGCTGTGAAGGTCCTGATGCCATGTATGTCAAACTGGTATCTTCCGATGGTCATGAATTTATTGTAAAAAGAG
AACATGCAGCGCTAAGCGCGGTGGGTCACAGCACTTTGGGAGGCTGAGGCAGGCAGATCACGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGA
AACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCCTGGTGGTGCGCGCCTATAATCCCAGCTACTCAGGAGGCGGGGCAGGAGAATCGCTTGAACC
TAGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCTACAGGAGCAAGACTCCATTTCAAAAAAAAAGAGAGAACATGCAC
TAACATGAGGAACAATCAAAAGGCCATGCTGAAGCCAAAACCATGTTGAATGACCCAGATCAGTTTGCTGAGAATGAACTCATTGAGAGCAATTTTAGAG
AGGTCTGTTCATGTGTGCTATCAAAAGTATGTATGTATTGTTTTTACCTACGAGATTCACTAAACTAACAGTTCCACTGAAATTTCTGAATTCCCAATTG
CACTTGATATTGCACTAGAACCGCTGATGCAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.