Detailed information on ENST00000603716

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000418314 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein coding ENST00000603716 523 272 CDS Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000603716 602 266 CDS Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000603716 600 271 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000603716 600 271 UTR3 Trans

Sequence

>TCONS_00075827 (631 nt)
CACAACCAAGGGGAGAAAACCTGTGGTGGCTGTGAAGGTCCTGATGCCATGTATGTCAAACTGGTATCTTCCGATGGTCATGAATTTATTGTAAAAAGAG
AACATGCAGCGCTAAGCGCGGTGGGTCACAGCACTTTGGGAGGCTGAGGCAGGCAGATCACGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGA
AACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCCTGGTGGTGCGCGCCTATAATCCCAGCTACTCAGGAGGCGGGGCAGGAGAATCGCTTGAACC
TAGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCTACAGGAGCAAGACTCCATTTCAAAAAAAAAGAGAGAACATGCAC
TAACATGAGGAACAATCAAAAGGCCATGCTGAAGCCAAAACCATGTTGAATGACCCAGATCAGTTTGCTGAGAATGAACTCATTGAGAGCAATTTTAGAG
AGGTCTGTTCATGTGTGCTATCAAAAGTATGTATGTATTGTTTTTACCTACGAGATTCACTAAACTAACAGTTCCACTGAAATTTCTGAATTCCCAATTG
CACTTGATATTGCACTAGAACCGCTGATGCAG

Expression



Full and truncated open reading frames discovered in TCONS_00075827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.