Detailed information on ENST00000605778

lncRNA-RNA interactions

Number of interactions: 30

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000605778 614 293 UTR3 Trans
ENST00000295822 eukaryotic translation initiation factor 5A2 protein coding ENST00000605778 654 295 UTR3 Trans
ENST00000316077 MAP7 domain containing 3 protein coding ENST00000605778 612 294 UTR3 Trans
ENST00000498535 makorin ring finger protein 1 nonsense mediated decay ENST00000605778 535 265 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000605778 544 299 CDS_UTR Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000605778 563 294 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000605778 502 272 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000605778 595 288 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000605778 543 296 CDS_UTR Trans
ENST00000620139 melanoregulin protein coding ENST00000605778 538 294 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000605778 655 286 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000605778 631 294 UTR3 Trans
TCONS_00032151 long intergenic non-protein coding RNA 959 novel protein coding ENST00000605778 537 268 UTR5 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000605778 614 292 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000605778 614 292 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000605778 614 288 UTR5 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000605778 647 295 UTR5 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000605778 614 293 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000605778 614 293 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000605778 614 293 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000605778 612 295 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605778 556 294 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000605778 657 295 UTR5 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000605778 614 277 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000605778 644 292 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000605778 623 288 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000605778 604 292 UTR5 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000605778 644 294 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000605778 546 294 UTR3 Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding ENST00000605778 645 294 noncoding Trans

Sequence

>TCONS_00221037 (4199 nt)
ATGGACCTCCCCCGTCCCCGCCATCCCTGCCGATCCTGTTGCTGCCGCCTTCCCGCCGTGCTCGGGCTGCCCGGGACTCTAGCCGCCAGGCTTCGCGTCG
CCCAGCGGCAGATCGGGCTCCTGGGAGCCTCTCCCCTGGCCGTTTGCTCGGCCTCGGCCCCAGCTGCCCTGGGGCCTAGCCACTAGCTCCCCTGGCGCTA
GCCTACCCTGTCTTGACCGCACCCTGAAGATTTGGGAAGTCTTTCTCCATCCCAAGAGTCGTCTCTGCAAAAGTTGGTGTCCTTCCTGGTGCTGAACCAC
GCTTCTGCTCAAAATGTGTTGAGCGTCGTCTGTCTGCAAAGCACGGTGCCAGGAGCTTTGGTGGAGAAGGCATGGGGTACATGTGTAAAGAGTACAGGCT
TTTGGTTAAACCTGAAGTCCTCCTCTACTTTCTGGGGGACCCTGGCCGTCCTTGCTGAGCCTCCGTTGACTTCTCTAATGGGGACGGTAATGCCTACCTG
ACCACAAGCTGATGAGTAAATGAGCTATGAGTGCAAAGTGTGGTGCAGTTCTGGCGTGTGCCAGCCTCTCAAGTGTCAGTTTCCGTCTCATTCCTCTTAA
TCTTCACTAAAATGGACAAGTATTCATTGAGCACCTAATGCGTGTTCAGTATGGTGGGAGATGAGGGATGACAGTATTATTTTTCTATTTTATAGGTTAG
ACATAGAACAAAAGGTTGAGTCTATTGCCCATAGCCGAACTTTTCTTCATTTTCTACTGTGGTTTAGAAGTCGGTATAGTAAGTTAAGGGTTGTTAGATG
TGCATTTTCACAGCTCCCAGCTTCCACTTAGGAGTAGATAACATAGGGGACTTTGCGAGCTGGTCTCTTTCCCTCTTAGCTTCAGAAGGGCTTCGAGGTA
GCCACCACTGAATTAGTTGAGAGACAAGGCACCCCTACGGAGGAAATCTCAACTGCACAACCCCTACTGTGCCCCAATTCAGCAGGAAGCAGTTAGAGCG
GTGGTCAAACCTCCCCAATAGCACTTGGGTTTTCCTGTTGAGAGGGGGTACTGAGAGACAGGACTAGTTGGATTTCCTAGGCTGGCTAAGAATCCCTAAG
CCTAGCTGGGAAATTGACCACGTCCACCTTTAAACACGGGGCTTGCAATTTAGCTCACACCCGACCAATCAGGTAGTAAAGAGAGCTCACTAAAATGCTA
ATTAGGGAAAAACAGGAGGTAAAGAAGTAGCCAATCATCTATCGCCTGAGAGCACAACAGGAGGGACAATGATCAGGATATAAACCCAGGCATTCAAGCC
AGCGGTGGCTACCCTCTTTGGGTCCCCTCCCTTTGTATGGAAGCTCTGTTTTCACTCTATTAAATCTTGCAATTGCACACTTTTCTGGTACGTGTGTGTC
ACAGCTCAAGCTGAGCTTTCGCTCACCGTCCACCACTGCTGTCTGCCGCTGTCACAGACCCACAGCTGACTTCCATCCCTCTGGATCCAGCGAGGCGCCC
ATTGCTGCTCCTGATCGGGCTAAAGGCTTGCCCTTGTTCCTGCAGGGCTAAGTGCCCAGGTTCGTCCTAATCTAGCTAAACACTAGTCACTGGGTTCCAC
GATTCTCTTCCATGACCCACAGCTTCTAATAGAGCTATAACACTCGCCGCTTGGCCCAAGATTCCATTCCTTGGAATCCATGAGGCCAAGAACCCCAGGT
CAGAGAACACAAGACTTGCCACCATCTCGGAAGTGGCCCGTCACCATCTTGGAAGCGACCTGCCACCATCTTGGGAACTTGGGGAGCAAGGACCCCCAGT
AACATAGTGACCAGGAGGAAATTCTTCCTCTCAACAGCTAATGCAGCAGGATCTCTTACACCGTACCCTCCCTCACCTTGCTCTTGCTCTTCATGGTAGA
ACACGTACCATATCTTAGCTGTACTCTATCAACTGCGCATCTGAAGTAAAGAGTGAAGTCTTCTTTGTTTCCAGTCATGGAGCAACAACTTGCTATGATA
CTGGCCTTCTGTAGCTGACTCTTCTTTGTCTACCCAGGCACTCTAATGGAACTTTAATTCTAGCTAAAGTTATTTTCTCAGACTCCTTTGAAGCAAGGGG
CAGCCATTTGACACACTTCAAGCCAATGAGTTGAATGTTGAACTTATTGCTGAGGCTTCTAAGAAAGCATATAGATGGAAGGGCTCTGCGAATCAGAGCT
CATCTTTGCCCTACACCTGTCTTCCAGGAGGAACGTGAAGAGCTACAGCACTCATAGTTCAGTCATGAAACAACAAACAGGAGAACAATGGCCTGCATTC
CAAGGATGGCAGAGCAGAAAACTGTAAAGAGGCTGGGCATTTGATGGCATTGTGGTGCCACCAGACAAGCCCTAAGCTATCTTCCCTAAGACTTCTTGTT
TTGGGTCAAATTCCTGTTTAAGCCAGGAAGTTTTCACAACCTTCACCACCCAGTCCTGCAGCTGTTGTCTCATGCTTGTGACTCAGACTTCCAGGAATCC
TTTAGAAGTGATGTGGTGATCTCGTTTGGCACTATGCAATGTACACTATTAATGAAGGTACCCTAATAATTATAAATATTAAGACAGAATGTGCATTTCA
CAGTGATTTAAACACTCTTTAACACTCTTTAAAACAGTCCATCAAAGGTTCGCTAACACAGAGAAAAACATTTAAAATTGTAATAAAGGCTGGGCGCAGT
GGCTTGCCTCTAATCCCAGCACTTCAGGAGGCCGAGGCAGGCAGATTGCTTGAGCTCAGGACTTTAAGACCAGACTGGGCAACACGGAGAAACCCCGTCT
CTACAAAAAAATTCAAAAATAAGCCGGGCGTGGTGGTGCACGCCTGTGTTCCCAGCTACTCTGAAGGCTGAGGTGGGAGGATTGCTTGAACCCAGAAGGT
AGAGGTTGCAGTGAGCTGAGACCATACCATGCACTCCAGCCTGGGTGATAGAGTGAGACTCTGTCTCAAGAAAGAATAAAAAGTAAAAATAAAATTGTAA
TGAACATTCAAGAAATTGAAATATACGGGTACAAAGATGATATAGTATCAGAAAAAATGATTTTTTTTAAATTTTACAGCCACTTGAATTAAGTACCTAA
AAATGCTTTTGATGCTGTTGAGCTTGGCTATGATAACAACAGTATGTAAATATTCCACTTTTGTTAAAATATGTATAAACAGGTATGTGTACAGAGCAGT
GTATGAAAGGGTGGTCCCCAGAATATTGATAGTGTTTGACGTGGAATTTGGGCTAGGAAAAATAATTACCAATGAGGAGATACAAGATAGCAGCAGTTAG
GGAGAGGCCGTCCATGCAGCTGCCTATTTAAATCACTGTCCATGTTAACAGATAAGAACTGGAAATGTCAAAGAACAATTGCCCAGCTCAGTTACCATCT
GCTACTAAAGATAGCCCCAGCTGGGTGCGATGGCTCACACCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAATTCAA
GACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTAGGTGTGGTGGTGCATGCCTGTAATCCCAGCCACTAGGGAGG
CTAAGGCAGGAGAATTGCTTGAACTCTGGCAGCAGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGTCGACAGAGTGAGACTCAGTCT
CAAAAAAAAAAAGCCCGTAATGAGAACTCTCAAGAGTACCATGGTAATATAATATGGTAATAGATAATAAAAGAGTCATGATCATTAATAATAAATATAA
TACTTCTACTTCAACTGAGGAATGGAAAACTAAACATCATATGTTCTCATATGTCCCTAAGCTATGAGGATGCAAAGGCATAAGAATGATACAATGGACT
TTGGGGACTTTCAGGGAAAGGGTGAGAAGGGCGTAAGGGATAAAAGACTACAAATTGGGTTCAGTATATACTGCTCGGGTGATGGGTGCACCAAAATCTT
AAAAATCGCCAAAGAACTTATGTAACTAAATACCACCTGTTCCCCAAAAAACTATGGAAATTAAAAATTAAAAAATAAGTATAATTTCTGCTTTAGCGAT
ATTAACTATTCAGTACACAATAAGTGAGTTTAGCAATTCAGTGATTTCTGACTGTTGGGTAGCTCTCTTTGTTAACAAATAAAATATAAATTTGAAGAAA

Expression



Full and truncated open reading frames discovered in TCONS_00221037

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.