Detailed information on ENST00000605834

lncRNA-RNA interactions

Number of interactions: 133

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000605834 630 302 UTR3 Trans
ENST00000280800 phospholipase B domain containing 2 protein coding ENST00000605834 640 316 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000605834 672 297 UTR3 Trans
ENST00000345127 prickle homolog 1 (Drosophila) protein coding ENST00000605834 558 312 UTR3 Trans
ENST00000353231 C-type lectin domain family 7, member A protein coding ENST00000605834 670 307 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000605834 724 313 UTR3 Trans
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000605834 687 305 UTR3 Trans
ENST00000382044 tumor protein p53 binding protein 1 protein coding ENST00000605834 656 310 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000605834 576 296 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000605834 629 301 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000605834 687 305 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000605834 616 303 CDS Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000605834 700 311 noncoding Trans
ENST00000529743 lincRNA lincRNA ENST00000605834 686 315 noncoding Trans
ENST00000532572 protease, serine, 23 retained intron ENST00000605834 653 295 noncoding Trans
ENST00000534514 flavin containing monooxygenase 3 processed transcript ENST00000605834 609 316 noncoding Trans
ENST00000548404 transcribed_unprocessed_pseudogene processed transcript ENST00000605834 584 277 noncoding Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000605834 673 300 noncoding Trans
ENST00000561387 ubiquitin associated protein 1-like retained intron ENST00000605834 643 306 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000605834 563 294 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000605834 669 307 UTR3 Trans
ENST00000587344 sense_intronic sense intronic ENST00000605834 672 312 noncoding Trans
ENST00000590442 zinc finger protein 532 retained intron ENST00000605834 698 303 noncoding Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000605834 694 300 UTR3 Trans
ENST00000617360 suppressor of cytokine signaling 7 retained intron ENST00000605834 512 212 noncoding Trans
ENST00000620788 pleckstrin homology-like domain, family B, member 1 retained intron ENST00000605834 631 307 noncoding Trans
TCONS_00006772 lincRNA novel protein coding ENST00000605834 655 304 UTR3 Trans
TCONS_00013935 platelet-activating factor receptor novel protein coding ENST00000605834 658 297 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000605834 611 298 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000605834 611 298 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000605834 611 267 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000605834 647 311 UTR5 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000605834 621 312 UTR5 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000605834 664 307 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000605834 664 307 UTR5 Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000605834 673 300 UTR3 Trans
TCONS_00061180 golgin A2 pseudogene 5 novel protein coding ENST00000605834 584 277 UTR5 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000605834 703 291 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000605834 703 291 UTR5 Trans
TCONS_00065858 ubiquitin specific peptidase 12 novel protein coding ENST00000605834 512 294 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000605834 627 269 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000605834 661 314 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000605834 616 317 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000605834 616 317 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding ENST00000605834 621 308 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding ENST00000605834 621 308 UTR3 Trans
TCONS_00078200 GTP cyclohydrolase I feedback regulator novel protein coding ENST00000605834 586 309 UTR3 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000605834 674 313 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000605834 724 313 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000605834 724 313 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000605834 724 313 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000605834 601 306 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000605834 601 306 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000605834 601 306 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000605834 601 306 UTR3 Trans
TCONS_00099311 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000605834 643 287 UTR5 Trans
TCONS_00099312 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000605834 643 287 UTR5 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000605834 606 325 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000605834 606 325 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000605834 638 288 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000605834 563 294 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000605834 669 307 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000605834 687 288 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000605834 687 288 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000605834 638 288 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605834 637 300 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605834 637 300 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605834 637 300 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605834 637 300 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605834 637 300 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605834 637 300 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000605834 637 300 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000605834 633 310 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000605834 647 315 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000605834 738 301 UTR5 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000605834 610 321 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000605834 610 321 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000605834 611 307 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000605834 705 310 noncoding Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000605834 740 296 noncoding Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000605834 692 310 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding ENST00000605834 631 295 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000605834 681 295 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000605834 657 299 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000605834 657 299 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000605834 657 299 UTR5 Trans
TCONS_00142538 antisense novel protein coding ENST00000605834 672 304 UTR3 Trans
TCONS_00143295 nucleoporin 35kDa novel protein coding ENST00000605834 710 311 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000605834 637 288 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000605834 635 293 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000605834 635 293 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000605834 630 302 UTR3 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding ENST00000605834 664 308 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000605834 631 289 UTR5 Trans
TCONS_00165713 LIM domain kinase 2 novel protein coding ENST00000605834 640 295 UTR3 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitter transporter), member 6 novel protein coding ENST00000605834 572 298 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000605834 624 284 noncoding Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000605834 627 297 UTR5 Trans
TCONS_00174508 calcium-sensing receptor novel protein coding ENST00000605834 698 304 UTR5 Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000605834 675 299 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000605834 603 310 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000605834 603 306 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000605834 652 273 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000605834 665 311 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000605834 648 304 UTR3 Trans
TCONS_00195828 LRP2 binding protein novel protein coding ENST00000605834 626 287 UTR5 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000605834 606 293 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000605834 606 293 UTR3 Trans
TCONS_00210636 polymerase (DNA directed), eta novel noncoding ENST00000605834 631 283 noncoding Trans
TCONS_00211226 antisense novel protein coding ENST00000605834 607 288 UTR5 Trans
TCONS_00215909 O-acyl-ADP-ribose deacylase 1 novel protein coding ENST00000605834 726 300 UTR3 Trans
TCONS_00216783 KH homology domain containing 1 novel noncoding ENST00000605834 697 310 noncoding Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000605834 625 327 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000605834 634 295 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000605834 697 315 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000605834 697 315 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000605834 697 315 UTR3 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000605834 661 316 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000605834 626 301 CDS_UTR Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000605834 721 307 UTR3 Trans
TCONS_00249090 transmembrane protein 245 novel protein coding ENST00000605834 620 307 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000605834 672 297 UTR3 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding ENST00000605834 667 309 UTR3 Trans
TCONS_00253258 sushi-repeat containing protein, X-linked 2 novel protein coding ENST00000605834 643 312 UTR3 Trans
TCONS_00253258 sushi-repeat containing protein, X-linked 2 novel protein coding ENST00000605834 608 311 UTR5 Trans
TCONS_00257366 lincRNA novel protein coding ENST00000605834 606 305 UTR5 Trans

Sequence

>TCONS_00257366 (2502 nt)
ATTTTCGCTTCCCCAGGTCGCGGCGGCGGGAGCAACAAGCAGCGGCTCGTGAGTCCGCGGCTCGCACCCAGGGGCGCCCGCACGTGCGGCTAGAACGTCC
GAGTCGGGGTCCGGGGCGGGGGGCGCAGGCCCGCGGCGGTAGGGGAGGAGAGCGGGCACCCGAGTCTCCATCCTCAGGGTGGCCTGAAGGTTCCAGGAGG
GCGTCCGGCGAAGGCACGGGGCTGCGACCATCCAGTTAGCAGGGCTGGTGTGACTGTTGAGAGTAAATGAAAATTCGTTTTGTGACACCGACCACCTCCA
AGGAATGAAAGGAGCAGTCAGCCGAAACGACAGCATTACTTGCGTCCTTACCTAATTGGAACCTTATCCGTGGCTGAGGGTGCCACCATTGGAGGGGCCG
CCGCCCCCTCTGACACCACCTGGCGCTCCGCTCCATTTAGGAGCTAGAACGAAAAGGAGGCCCATCCCCCAGTAAGTCACAGCCCACGCCAAGATGAGTT
CTGGAGCCTGTGCGACCGAAGTTTCTTCACCGCAGGGCGAGGTGGACAAGGGTGTGAGTTACTTTGACTTCAAGACGTCTCAGTGGCGGCTGGTTCTGGA
GAGAGGCTTTATGCTGGAGCACTTCCAGCAAAGTTCGGCTGGGGCCTCCTTAACTCACTGGCTGGTCACCCTTGGCCTCGGTTTTCAACCAAAGCCTAAG
GCCTCAGTTTTCAACGCTGTAAATGGAAATAAATGAGAGAAGAAAGTACAGCCCGTGTGACAAGTGCAGCAAGCAATGCAACTTCCTTGGGACCTACCCT
TTGTGGTCCCTTGCTTTAAAAGTATAGATTCACATTTAGTTAGACCTGTTTCTTCCTCGCATGCAATTTCACCAGTCTTTTCCCAGACTTCTGTACTCAA
CAGAGGAAGTTCCTTCCTGGGAGACCATAGCTGTTTGTATGTAAAGAGTTGCGAAAAAACAAAAGCAAAACAAAAAACTCCAACACCTCTCTGTCACAGA
AGTATTGAATTATATAGACTGGAAAAATGGAAGTATCCAAGAAAACGCGTGTGGTAAGAAAATGGCTAAGGTGCAGGATTCTGTTTTGTGGCTCTGGTCT
CAGAAATAGACCTCACATACACATTATTCCTTATCCCCTCTATTATAATACTCACTTTTTTTTTTTTTTAAGAGACAGGGTAGGCCGGGTGCAGTGGCTC
ATGCCTGTAATCCCAGCATTTTGGGAGGCCAAGGCAGGAGGATCACCTGAGGTCGGGAGTTTGTGACCAGCCTGACCAACATGGAGAAACTCCATCTCTA
CTAAAAATACAAAATTAGCCAGGTTTGGTGGCGCATGCCTCTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGCAGG
TTGTGGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGGGTCTTGCT
CTGTCACTCAGGTTGTGCTATCATAGCTTACTGTAACCTTGAACTCCTGGCCTTAAGCGATCCTCCTGCTTCAACCTCCCAAGTAGCTGGGACTACAGGC
CTGTGACAGTGCCTGGCCCAGGCACTGACTTTCTTATGTCATATAGCAATGACCACTAAGGGAAAGTCTATACAAACTATAGAATAGTTGTCATTCTTTA
CCCAACCCGGGACACAAGTTAAAAACCTAGTATTCATTTTTTTTTTCCTGTACCAAAACAATCATCTTCCTTTATTTTTCCTGGAGCGGGAAGAGGAGAG
TGGAGAAGAAGGGAAGAATGCAAAGTGTCACTTTGAACTTCTCGTTCACCACACACGTGGGAGTCCACTCATGTCAGCAGCCTCCGTGCACAGGCCCCAG
GTGAAAGAAAGAATGAGGTCTAGTTGGACCAGCTAACACTGCCTGCCTTGTGTTTACGAAAGGCAGCTGCCTCTGTGGTGTGATTTCAGGGGAGCCAGAC
AGGGCCGGGGCCACGAACCTGCATCCTGCATCCTAAGCACCTATTGCCATGCGTGAGGCTAACTGGAAACTCACTTGCTGGGTGCAGATAGCTTCCAAAC
TATTGTGATGCTCATGCTTGACTTCCCAAGGAACGTGTTTCAGGAAAGGCCATTGCCCTCATTATGGTCTTTGATAAGCAGGAAGAAGTTTGTTGTTCCT
TTTTTTTCTTAATGCCCTACTTCGTGCAACATACATCCAATCAGTCATATCCTATTGACGCTACCCCTAAATATCTCTGGGCCTGGCCCGTGCTCAGGGC
ACTGCCTTCATTCAGTTACTGCACTTGCCTGCTGCCTGTGCTCCTGGTCTCCTGCTTGGACTCCCCCAGGCCAGCAGCCACACTACTGCCAAAATCCAGT
CGAAAATTAACTTCAGGTAAAGCACAATTCCAAACCTAACACTGCCCCCCTCAAAAGCCTCTCTGTAGCCTTCAGAATAAAGACCATATTATTTGACAAG
ACA

Expression



Full and truncated open reading frames discovered in TCONS_00257366

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.