Detailed information on ENST00000606197

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000553936 gephyrin nonsense mediated decay ENST00000606197 522 287 CDS_UTR Trans
ENST00000592189 zinc finger protein 667 nonsense mediated decay ENST00000606197 582 289 CDS_UTR Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000606197 609 297 UTR5 Trans

Sequence

>ENST00000606197 (3969 nt)
GGGCACGCAAGCTTCCCCTGGTTACCTGAGCTGCTCCTGCCGTCTCCCGCCTGGGCTTCGCCGTGGTGCACCCGATCCCGGAATCGTGCGTCTGCGCCCT<br />GCGAAAGAAGGACCTGCTGGCGGAGCTCCGGCCGGGGTCTCCTGCCTCGCAGCTGGGCGAGGGGACTTGGAGGACAGGGTGAAGCTGCAGAAGACCTGGG<br />GTGGGATGGCTAGAGAGGACGCCAAGGACTGGGGAAGGGGAAGTTAGGAATACCTTACATCCAATGCCCACCCGTGCTCCGCAGGGCAAGGGCAGCCGTC<br />GCCTCGGCCGCGTGCACCCAGCTCAGGCTGTTCCCAGGGATTTAGTCTGGGGGGACAACCCATGGCGAGATGTGGTGGCATTTTACCTCAGAGTGGAGCT<br />GAAGATGGATAAACAAGGTATCTGATGTATCTGCCTGAGAAGGCAGAGCTGGAGAAAGGCGGAGCGAGGGAGCGCGTGAAAAGAAAGAGATGCCGAATGC<br />CGGGTGATTGTCTGCCGCTTGCTGTGCATTCTCATTCTAGGGAGGATGGCATAATTTATAACCCAGCACATGGATAGAGGAACTGTAAATTGTAGTCTGG<br />ATGTCCCCGGCGCTGTCGACGAAGGAACTGATGGGCTAGGCTCACAGGCAGAAGGAATTTTCCTTGTCTTGGATGAGACTTTTGACTTGGACTTTTGGGT<br />TAAGTTCTGGAGACCAGAAGGCCAAAATCAAAAGTATGGGCAGGCTTGATTTCTTTAGAAGACTCCAGCGGAGAACTGTGTCTCCTTGCTTCTGATTCTA<br />CATCTCCATCCATGGGCCACTGTTTCAGCAACCTCAGCCAGTGCAACACAACCTCAGCCAAGAAGAGTATGCAGAGAAAGGAGTCCCCTACCTGCCACAA<br />AACTGTTGTCTGAAAACTGTCTCATATTGTCTCAAGTTGTCATTCATTGTGAATTAGACCTGTTTAACATGTAATCTGCAACATGCTTCACTGTCTAATT<br />TTCCAGAGCCCCTCATATAAGGAACTGTATTATTGGTATAATCATCATGGTGAAGAAGTTGGTATGTGGGGGAGAGATGACAGAAACAGAGAGTAAGTCA<br />GAGCTGGCTGCCTGACAGATAAAAAGGAAATGACCAAAAAAAAAAAAAAAGACACAGAAGAATACTTTGTTGTCCACACAGAAAAGGGAAGTGTAGGTAA<br />GACAGCAGTAGACTAAGATTCTTAAGACTCAAGTTCTAGTCTTATTTATTAGCTATGGGAGGCCTTGAGGGAGTTCTAGAATTAAGTGATCTCTCTTTAT<br />AAAATAGGAACAGTAATAACTTCCTGGCTAACTCCCTGGCTGTCTCACAATGCTGTAGTAGTAAGAAATAATTTTATAATTAAAGACTATTTTAGGGCTG<br />ATTACATTTTTGGGCAGTGGCTCATACATGTAATTTCAACATTTTGGGAGGCCAAGGTGGGCGGATTGCTTGAGCCCAGGAATTCAAGACCAGGCTGGGC<br />AACACAGACCTTGTCACTACAAAAGAAAAAAACATTAGCTAGGCGTGGTGATGTATGCCTGTGGTCCCAGCTACTCAGGAAGCTGAGACAGGAGGATCAC<br />CTGAGCCTGGGAGGTCGAGGCTACAGTGAGCCATGATCACACTACTGCACTCCAGCCTGGGAAACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAGG<br />AATATTTTACACTTCAAGGTTCTATACAAATGTAAAATATCATTCTATTACTTATTTATAATGCTGATTATTCTTTAAATGACTTTAAAATGTTAATCTC<br />TGCTTGAGCCTACGGAGAAGTATGTAACAAATTTGTGAAGGATTGGCATTAAACATAGTCAAAATAAAACATAGAAATTATGGTAAATAATTTAACTGGT<br />AAAATAATCTAAGTGGTAGTTCTCAGGTAAGTGGAAATTCGATTAGCTGATTGTTTAGGATTCTTGGTTATAAGTGACAGAGACCTGACTAAAAGTACAT<br />GAAGCACATAACTGAGAAGGTTGTGGTATGGCTCAGCAGAAATGGGAAAATCTTGGGACTGGTTCGTGTTTTATTTACATTATCTTTGTTCCCAGGCAGT<br />CTCTGCATGTAAGTGGCAAAGATGACTGTCTGAAAATATATACCTACTTTTTTAAAGGGCTATCTCAAGCCATTCTGGAGAAGCACCAAAAGCCACTTTG<br />CTTATACTGGGAGAATAGTTTGCTTTCCCTAATTTGTGATGAGTGAAACACTGAACAGAGACATAGAATAATATTCTGTAGTTCAGGGTTGGTGTAATAT<br />GGCCAGTGGGCGGAATCTGGTCCTCAGACTGATTTTGCAAATAATCTTATAGAAACACAGCAACACCCATTCATTACATGTTGTTTATGGTTGCTTTGGG<br />GTTACAATGGCAGAGTTGAGTAGTTGTGACAGAGATCACTAGGCTCACCACATCTGAGATATGTACTGACTGACCCTGTACAGAAAGTTTGCTGCTCTTA<br />GAGGAATGTGTGTTTCTAGTGTCAGCAATAAACTTCTTGGATTTGTTTTGTTTTCTCATCTTTACATGATAGTTGCAGACTAGTTGATCCTTGTGACCTG<br />TTTTTGAATGCCACTGTGTATTCTGTCAGGGCCCTCTGATTCTGTTTCTTATGGTGCTGAATGCACAATTTAATGCCCTGGAATTTCCTTCTGTCTTCTG<br />CTAAACTCATGCCTCTTCAGATAGTTAAAATCCTGTTCTACCTTAGAAGTCTCCAGAGTTATTTTCCTAAATTAAGAAGAACTGGCTTTGAAGTTACTCA<br />TTATGCCACACACAATGGTTGAAAAGAGCATCTCTTATGTACTGTGTATATTTCAGCATCCACTCAGCTTCTTAGGTAGAAAAGGAAGAGTCTTCCACAG<br />TGTATTTTATCCATATTTGGGTCAGAAACTCTTCTTTACCACGGAGCGTGATGGAAGAAAGATATGGGATGGTAACAGTAGGCCAGGGATGTAATAATCA<br />CAAAATTTGAGATATTTTGTGACTGGTGACTCACGCCTGTGATCCCAGCATTTTGGGAGGCCAAAGCGGGCGGATCACCTGAGGTCAGGAGTTCAAGACC<br />AGCTTGGCCAATGTAGTGAAACCTCATCTCTACTAAAAAAATATAAAAATTAGCTGGGTGTGGTGGTGCACACCTGTAATCCTAGCTACTCAGGAGGCTG<br />AGGCAGGAGAATAGCTTGAACCAAGGAGGTGGAGGTTGCAGTGAGCTGAGATTGTGCCACCACTGCATTCCAGTCTGGGTGACAGAGCGAGACTCTGTCT<br />CAAAAAAAAAAAAAAAAAAAATCTAGAAAAAGATCTCCAAGATTCAATCATCTAATTATTTCTTTTAAAAATGAGAAAAATGACTCCTGGTCAGCTTTTA<br />CCTTCTTTTTCCAACTGTCTTGACAATACTTTCATATTGGGCTTTTAAAGTCTCAAGTAATAGGTTTTTAAAACCTCAGCTGATAAAAGTATAAAAATAA<br />AGTTAAAACATATTAAAGACAAAACCCAAGAATCAGCTTCCTCTTCCTTCATTACTCTTGCATGGGTGTTGGCTCTAATTTCTCCATCTAGTTAGGCAGT<br />CCTTTGCTTTTTATTGCTTGTTTATTGATGACATTTGCCATTTGTAGCAATAGTAATAGAATCATCTATATATTTGTGGCCTTGTTGAATGTAGAAAAAG<br />GATAGTGGCATTTTCTAATTGTGTAACCCTATAACACCTTGACGGGGGACTACAGTTCATATGCTGGACCTTTTGTGTTTGTTCATGGCGGGTGGGTTGC<br />TTTAATATACTTAGCACATTGTCCTAATTGCCATCCTTTTGGGGAGGGCTATATATCCAAGCTAATATGGTAGCATTTTTGTTTTAACATAGAGCTGACC<br />CAAGGTAGACGTAAGTGTTGTTCATTTTTGCCTAATACTAATAAAATTACCTAATTGTTGAAGCTTGGA

Expression



Full and truncated open reading frames discovered in ENST00000606197

In silico ORF/peptide predictions
>peptide 1 (81 aa)
GTQASPGYLSCSCRLPPGLRRGAPDPGIVRLRPAKEGPAGGAPAGVSCLAAGRGDLEDRVKLQKTWGGMAREDAKDWGRGS

>peptide 2 (72 aa)
MAQQKWENLGTGSCFIYIIFVPRQSLHVSGKDDCLKIYTYFFKGLSQAILEKHQKPLCLYWENSLLSLICDE

>peptide 3 (70 aa)
GHASFPWLPELLLPSPAWASPWCTRSRNRASAPCERRTCWRSSGRGLLPRSWARGLGGQGEAAEDLGWDG

>peptide 4 (63 aa)
MPHTMVEKSISYVLCIFQHPLSFLGRKGRVFHSVFYPYLGQKLFFTTERDGRKIWDGNSRPGM

>peptide 5 (59 aa)
MDRGTVNCSLDVPGAVDEGTDGLGSQAEGIFLVLDETFDLDFWVKFWRPEGQNQKYGQA

>peptide 6 (53 aa)
MPTRAPQGKGSRRLGRVHPAQAVPRDLVWGDNPWRDVVAFYLRVELKMDKQGI

>peptide 7 (53 aa)
MHNLMPWNFLLSSAKLMPLQIVKILFYLRSLQSYFPKLRRTGFEVTHYATHNG

>peptide 8 (50 aa)
MYLPEKAELEKGGARERVKRKRCRMPGDCLPLAVHSHSREDGIIYNPAHG


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT108067 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q6UX73|CP089_HUMAN (Evalue: 2.0E-18)