Detailed information on ENST00000606310

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000432372 neuropilin 1 protein coding ENST00000606310 516 299 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000606310 540 273 UTR5 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000606310 544 305 UTR3 Trans
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000606310 573 296 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000606310 635 300 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000606310 553 300 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000606310 635 300 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000606310 590 296 UTR3 Trans
TCONS_00053503 anoctamin 4 novel protein coding ENST00000606310 613 298 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding ENST00000606310 613 298 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000606310 548 272 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000606310 577 297 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000606310 621 297 UTR5 Trans

Sequence

>TCONS_00192322 (2288 nt)
TTTTTTTTTTTTTGAGACACAATTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACTTCTGCCTCCTGGGTTCAAGCAA
TTCTCATGCCCCAGCCTCCCAAGTAGCTGGGAATACAGTTGTGTGCCACCACACTGGCTTATTTTTTGTATTTTTTTAGTAGAGATGGGGTTTCACCATG
TTGGCCAGGCTGGTCTCTAACTCTTATCCTCAAGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCTAC
TTATCCTGTTAATGAAAATATTTGATTGGACAGAACATCTTATTCCTTAACTCTGTTATGTGCTTTTGTAGATTGTTTTTACTTACTGTAGATATCTGTT
GCTCCAGAGTCCCAGAAATCAGTATGATGAGTTCAGCACAGTTACTAGAAGGAGACAAAAAGATATCTTCTTAATTAGGTGATATCAGGGATAGTTCTGG
TTATTGATTGCTGTGTGGAAAACACTCCAAAACTCAGTGACTTTAAACAACACCAGTCATTGTGTTATTTCTCATTATCCTAAGTACTGACTGGGCTCAG
CCAGACAGTTCTTATTCGGGTTCTCATGCAGTTATAGTCATCATCAGATTGTGGCCGCGACTGGCATAATCTCAAAGGCTTCCTTAGTATTTCTGGCAGT
TGATGCTAGGACCTCAGCTAGTGCTGGGGCTGGAACATGTCTACACATAGCTTCCCCACAGCATGGTGGCTAGGTACTAGGAGTGACTGTCCCAAGAGGA
CCAGGCAGAAGCAGTTACATTTTATGACCTAGTCTCAGAAGTCTCATAACATCACTTCCACTAAAGTCCCAAGCCCCCCCAGATTCAAATGGAGGGAGCA
TATATCCCATCTCAGTGGTAGGAATTTCAAAGAATAAATTCTGTGAAACTGTAGTAGATAGTCTGTTTTCTCCCCTGTTTAAAACCTCCTGAGGACCTCA
CATGCTTCTGGATAAAGCTCAGGCTCTTCAACATGGTTTAGAAGGTCCTTCCTAATCTGGCCCACATTTGTCCATCCAGCTCCAACTCTTGCTACTCTAC
GCCCCTCTTCCCCTCTTGTGGAATGGCTAATTCCTACTCATCATTCAGGTCTTGGCTTAGACATCTTTTCATCTGAGAAGGCTTTCTGGTCTAGTCTCAC
CTGGTTAGGTGAACTCCCCATGTGCCCCATGTACCTCATTTATCAAAGTGCTTATCATATGCCTGTCACTGTCTGTTTTCTTCACTAGACTCAGGTGCCA
TGTCTGTCCTTTCTGCTCTGTTTGCTGGGTGCCTAGCATGGTAGGGGATGTATCAGAGGATTAGTACTTATTTAACTCACCAGCTCATTTAACTATATTG
TATAACAATGTTGGTGGTCATATTGGTCCCCCATGGACAGCTTTTCGTCTCTAATACCATACACTCAGTGCAGGGTCTGAATGTCCCCCCAAACTCATAT
GTTGAACTCCAAATCCCCAAGGTGTTGGTATTAGATGATGTAGCCTTTGGGAAGGAATTAGGGTGGTGCCCTCATGAATGGGATTTGTGTCATTATAAAA
CAAGCCCAAAGAAATTTGGTCACCCCTTCCTTTAAGCGAGGTCATGGCAAAAAGACGCTGTCTATGAACCAGAAAATGGGCTCTCACTAGACACCAAATG
CTGGTGTCTTGTTCTTGGATTTCCCAGCCTTCAGAACTGTGAGAAATATATTTCTGTTATTTATAAGCCACCCAGTTTTTGGTATTTTGTTATAGCAGCC
TGAAGAGACTAAGACAGCCAGTCCCAACCTTCCACATTTAGACCTGACTCCAAGTTTTGCTCAGCCCACTGTGTATCCCTTCCTCCTCCCAACCAAAGTG
TCCCCACTCTTTCTCTATTCTGTTCTGCCTATTATTCAAGGTCTAACTTGTGTCACTTTTTCAATGAGGCATTTGCAAGCTCTTTAAATTCTCAAGGATT
CTCCATTAATTCACCATATCTATTTTGAGAATCTACAAAGGACAAGGCACTACGAAAGACTCTACATGCCACAGGGAAAAGACAGACAAGATCTCTGTCC
CAACACAGAAAATTTTAGCCTGCCATGTTGACTCCCAGGGATCTTTTTGTTTCTGTAGGAGGTGCTCATTACAGAGTGGCCAAATTCCTACTGAAGAATG
GACTTGGTTGTGAAATAAAACAATCCTGGGCAATATTTGTTGATAGTTTTGTTGAGGATGATTCAGGAAATAAATACAAACTTTTAACT

Expression



Full and truncated open reading frames discovered in TCONS_00192322

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.