Detailed information on ENST00000606434

lncRNA-RNA interactions

Number of interactions: 43

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257287 centrosomal protein 135kDa protein coding ENST00000606434 623 305 UTR3 Trans
ENST00000330676 TLC domain containing 2 protein coding ENST00000606434 600 259 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding ENST00000606434 600 302 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding ENST00000606434 589 282 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000606434 599 288 UTR5 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000606434 569 306 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000606434 571 284 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000606434 526 292 CDS_UTR Trans
ENST00000506202 centrosomal protein 135kDa retained intron ENST00000606434 623 305 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000606434 574 303 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000606434 613 282 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000606434 625 296 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000606434 613 308 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000606434 691 305 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000606434 605 308 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000606434 607 297 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000606434 625 296 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000606434 609 296 UTR5 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000606434 600 302 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000606434 572 285 UTR3 Trans
TCONS_00101146 myosin phosphatase Rho interacting protein novel protein coding ENST00000606434 573 295 UTR3 Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000606434 610 302 UTR3 Trans
TCONS_00114623 glutamine rich 2 novel protein coding ENST00000606434 626 287 UTR5 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-associated protein 1 novel protein coding ENST00000606434 626 287 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000606434 632 308 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000606434 619 297 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000606434 621 308 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding ENST00000606434 613 304 UTR5 Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000606434 603 314 UTR5 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000606434 649 300 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000606434 624 297 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000606434 601 303 UTR3 Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding ENST00000606434 616 289 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000606434 616 289 UTR5 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000606434 611 311 UTR3 Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000606434 586 297 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000606434 586 297 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000606434 551 299 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000606434 604 296 UTR5 Trans
TCONS_00243136 glioblastoma down-regulated RNA novel protein coding ENST00000606434 507 287 UTR3 Trans
TCONS_00247616 unprocessed_pseudogene novel protein coding ENST00000606434 507 287 UTR3 Trans
TCONS_00247617 unprocessed_pseudogene novel protein coding ENST00000606434 507 287 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000606434 602 302 UTR5 Trans

Sequence

>TCONS_00252827 (3280 nt)
GTTTACATTCCCACCAGCAGTGTGGAAGTGTTCCATGATTGCCGCATGCATGCCAACATCTACTGTTTTTTGATTTTTTTGGTTATGGCCGTTCTTGCAG
GAGTAAGGGGGTATCGCACTGTAGTTTTTATTTGCATTTCCCTGATCATTAGTGATGTTGAGCATTTTTTCATACTTTGTTGGCCATTTGTATATCTTCT
TTTGAGAATTGTCTATTCATGTCCTTAACCCACTTTTTGATGGGATTGTTTGTTTTTTTCTTACTGATTTGTTTGAGTTTGTTGTAGATTCTGGATATTA
GTCCTTTGTCTGATGTATAGATTGTGAAGATTTTCTCCCACTCTGTGCGTTGTCTGTTTACTCTGCTGACTGTTGCTTTTACCATGCAAAAGCTCTTTAG
TTTAATTAAGTCCCATCTATTTATCTTTGTTTTTATTGTTGGAAACTATTATTCTAAGTTAAGTAACTCAGGAATGGAAAACCAAACAACCTATGTTCTC
ATTGATATGTGGGAGCTAAGCTATGAGGACACAAAGGCATAAGAATGGTACAATGGACTTTGGGGACTTGGGGGGAAGGGTAAGGGGGGGTGAGGAATAA
AAGACAACATATATGGTATAGTATATACTACTCAGGAGATGGGTGCACCAGGATCTCACAAATCACCACTAAAGAATTTACTCATGTAACCAAATACCAC
CTGTACCCCCAATAACTTATGGGAAAAAAAGATATTCATCGACCTATTCCAGGTCCTCTCTCCACCACTGAGCCTCGTGGGGACATAAAGAGCTGCCTGC
CCTCCCCTGTTCCCCTTGCCTTTTTGCAGCAGGATTCCTGAAAATGTTGACTTACAGATACGTTTTTGAGATATGAACGTTTGTTATTTCCTGGTGCTTA
GGGAAGAAAATAATTGATGTTGTGAGTTGGGCGGGACTTTAGGGACTATGCTGAACAATCCACTGACCACTGCAGGCTCCCATTTATGATCTTGGGCCAA
CAGCCACCAGCCTCTGTTCATGCAGTCTCACTGAGGGCAGTTACTTCTTTGGAGTGGCATGCCTCTGAGCAGATAATTCCAATAATCAATGTCAAACTAG
ATATTGAAACAGCCCAAGTGTCCTGGTAAAGCTAGCTGTTGATACTCCTGACTGTTGCATTATTTTGTTTTTTGTTTTGTTTTGTTTTGAGACGGAGTCT
TGCTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCAAGCTGTGCCTCCCGGGTTCAAACAATTCTTCTGCCTCAGCCTCCCGAGTA
GCTGGGATTACAGGTGCATGCCACCATGCCCAGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGGCTGGTCTTGAACTCCTGAC
CTCAAGTGATCCACCCACCTTGGCCTCCCAAGGTGCTGGGATTACAGGCACAAGCCACAGCTCCCGGCCCAACTGTTGCATTATTATTTGCAAATGTTGG
CTATCCCTGCTGTTGTCTATATATCAATTTTGTCTACCCAACACAGCTGTAAACTTCTCAAGGTGAGGAGTGAGCCATCACTCTTTGCACCTCTTGCTGT
GATTGACATGGTATACCTTAAGATATATGTTAATTCCTATGTCTTAATAAATATTGGCTTATGGAGAATTTGTTGGAGCAAGTACAGACCCTATGTTTAA
CTTCTTTTATTCAACAGAATTAAAAAACTAGCTAGTTCTCTCAATAAAATAATACTTTCTTTTCTTTCTTAAAATCTAGCTGATCTGGTCTAAAATACAC
ATGTGGGAGGCGGGATTGTAGAAATATCTCAAATTAATTAGCGTCTAGCTCTTTGTAAGGTAATTGACAGTCTGAGTTAGTTGCTTCCCCCACTGCAAAG
CAGCAAAATCTGCTCTCAAAGGCTTCACGTAGCCGGGAAAACTCCGTTCCCAATTCAGATCCTCTGGGGAGGGCATCAATTATTTCCTATTGTTTTTAGC
ACCGATTGTTCTGTCTAATTTGAAAGGATCCAAAAAAGGAAATGATACTTGGCATTAGTATCATTCTCCATCACTCTTGAAAGATATATGAAGGGAATGT
TGGCGCAATCAGTCTAGAAACATATTTCTCCCATAACAATAAGCCAGTTCTTTTTGCTTTGAATCAGAAATAGCTCCATCAGGCCCATGAAGGAAAGGGA
AACAAAACTGAGTGCCAAGCATATGATAACATGCTCAGCATCATATGACATTAGGGGATTGCAAATTGAAACAACAGTACCACCACACACCTATCAGAAT
GGCCAAAATCCAGAAGACTGACATCACCAATGCTAGTGAGAATGTGGAGCAACAGGAACTCTCATTCACGGCTGGTGGGGATGCAAAGTGGTGGAGCCAC
TTGGGAAGACAGTCTGGCAGATTCCTAAAAAGGTAAACATACTCTTACTAAACAATCTAGTAGATTTGCTCCTAGGTGTTTACCCAAAGGAGTTGAAAAC
ATGTCCACACAGAAAACCTGCACATGAATGTTTATAGCAGCTTTACTCAAAATTGCCAAAAATTGGAAGCAACCAAGATGTCCTTCAATAGGTGGGCGGA
TAAAGAAATTGTATCCAATTCTATTTCTATGAGGAAAATCTATTCATACAATAGAATACTAGTGTCAGAGATTTTTTTTTAACAAAGAGCTATCAAGCCA
TGAAAAGATAAGGAAGAACTTTAATGCATATTGGTAAGTGAAAAAAGCCAGTTTGCAAAGGCTAGATACTATATGATCCCAACTGTATAACATTCTGAAA
AAGGCACAACTATGGAGACAATAAAAAGAACAGAGTTTTGGATGAAGGGAGGGATGAACAGGCAGAATACAAACAAATTTTAGGGCAGTGAAACTATTAT
TATGATACTTTATGGATATAGAATATTATGCATTTTTCAAAACACATAGAATATACAACATGAAGAATGAATGCTAATGTAAACTCTGGATTTTTATTAA
TAATATTATTTAATTAAAATGATTTATTTTACTTATTTTCATTATTATCTAAAATGTTATTTAATTATTAAATTTAGATGCTACTTAATTTTTGCTTTAT
TATTATTATGTTAATATCATCAACTGTAACTAGTGTACAACACTAATGCAAGATGTTAATAGGGGAAATCGTGTTGGAGAGAGAGATATGTGAGAACTCT
GTACTTTCTTTTCAATGTTTCTGTAAACATAAAGCTGCTCTAAAAAATTAAATCTATTAAAAAAAAAACTGAGTGGAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.