Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000257287 | centrosomal protein 135kDa | protein coding | ENST00000606434 | 623 | 305 | UTR3 | Trans | |
ENST00000330676 | TLC domain containing 2 | protein coding | ENST00000606434 | 600 | 259 | UTR3 | Trans | |
ENST00000339732 | polypeptide N-acetylgalactosaminyltransferase 15 | protein coding | ENST00000606434 | 600 | 302 | UTR3 | Trans | |
ENST00000409359 | Rho guanine nucleotide exchange factor (GEF) 4 | protein coding | ENST00000606434 | 589 | 282 | UTR3 | Trans | |
ENST00000439138 | transmembrane protein 98 | protein coding | ENST00000606434 | 599 | 288 | UTR5 | Trans | |
ENST00000478730 | ORAI calcium release-activated calcium modulator 2 | protein coding | ENST00000606434 | 569 | 306 | UTR3 | Trans | |
ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000606434 | 571 | 284 | noncoding | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000606434 | 526 | 292 | CDS_UTR | Trans | |
ENST00000506202 | centrosomal protein 135kDa | retained intron | ENST00000606434 | 623 | 305 | noncoding | Trans | |
ENST00000513143 | podoplanin | protein coding | ENST00000606434 | 574 | 303 | UTR5 | Trans | |
ENST00000552918 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000606434 | 613 | 282 | UTR3 | Trans | |
ENST00000553127 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000606434 | 625 | 296 | UTR3 | Trans | |
ENST00000620139 | melanoregulin | protein coding | ENST00000606434 | 613 | 308 | UTR3 | Trans | |
TCONS_00028040 | ankyrin repeat domain 16 | novel protein coding | ENST00000606434 | 691 | 305 | UTR3 | Trans | |
TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000606434 | 605 | 308 | UTR3 | Trans | |
TCONS_00030588 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000606434 | 607 | 297 | UTR3 | Trans | |
TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000606434 | 625 | 296 | UTR3 | Trans | |
TCONS_00053851 | transmembrane protein 263 | novel protein coding | ENST00000606434 | 609 | 296 | UTR5 | Trans | |
TCONS_00090929 | nucleoporin 93kDa | novel protein coding | ENST00000606434 | 600 | 302 | UTR3 | Trans | |
TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | ENST00000606434 | 572 | 285 | UTR3 | Trans | |
TCONS_00101146 | myosin phosphatase Rho interacting protein | novel protein coding | ENST00000606434 | 573 | 295 | UTR3 | Trans | |
TCONS_00105791 | arylsulfatase G | novel protein coding | ENST00000606434 | 610 | 302 | UTR3 | Trans | |
TCONS_00114623 | glutamine rich 2 | novel protein coding | ENST00000606434 | 626 | 287 | UTR5 | Trans | |
TCONS_00114628 | phosphoribosyl pyrophosphate synthetase-associated protein 1 | novel protein coding | ENST00000606434 | 626 | 287 | UTR5 | Trans | |
TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000606434 | 632 | 308 | UTR3 | Trans | |
TCONS_00118582 | centrosomal protein 76kDa | novel protein coding | ENST00000606434 | 619 | 297 | UTR3 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000606434 | 621 | 308 | UTR5 | Trans | |
TCONS_00137691 | FOS-like antigen 2 | novel protein coding | ENST00000606434 | 613 | 304 | UTR5 | Trans | |
TCONS_00142168 | LY6/PLAUR domain containing 6B | novel protein coding | ENST00000606434 | 603 | 314 | UTR5 | Trans | |
TCONS_00148450 | coiled-coil domain containing 88A | novel protein coding | ENST00000606434 | 649 | 300 | UTR3 | Trans | |
TCONS_00150696 | septin 10 | novel protein coding | ENST00000606434 | 624 | 297 | UTR3 | Trans | |
TCONS_00186316 | KIAA0232 | novel protein coding | ENST00000606434 | 601 | 303 | UTR3 | Trans | |
TCONS_00203984 | family with sequence similarity 169, member A | novel protein coding | ENST00000606434 | 616 | 289 | UTR5 | Trans | |
TCONS_00203985 | family with sequence similarity 169, member A | novel protein coding | ENST00000606434 | 616 | 289 | UTR5 | Trans | |
TCONS_00210928 | leucine rich repeat containing 1 | novel protein coding | ENST00000606434 | 611 | 311 | UTR3 | Trans | |
TCONS_00213181 | tubby like protein 4 | novel protein coding | ENST00000606434 | 586 | 297 | UTR3 | Trans | |
TCONS_00213191 | tubby like protein 4 | novel protein coding | ENST00000606434 | 586 | 297 | UTR3 | Trans | |
TCONS_00213738 | enoyl-CoA delta isomerase 2 | novel protein coding | ENST00000606434 | 551 | 299 | UTR3 | Trans | |
TCONS_00235393 | processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) | novel protein coding | ENST00000606434 | 604 | 296 | UTR5 | Trans | |
TCONS_00243136 | glioblastoma down-regulated RNA | novel protein coding | ENST00000606434 | 507 | 287 | UTR3 | Trans | |
TCONS_00247616 | unprocessed_pseudogene | novel protein coding | ENST00000606434 | 507 | 287 | UTR3 | Trans | |
TCONS_00247617 | unprocessed_pseudogene | novel protein coding | ENST00000606434 | 507 | 287 | UTR3 | Trans | |
TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000606434 | 602 | 302 | UTR5 | Trans |
>TCONS_00252827 (3280 nt)
GTTTACATTCCCACCAGCAGTGTGGAAGTGTTCCATGATTGCCGCATGCATGCCAACATCTACTGTTTTTTGATTTTTTTGGTTATGGCCGTTCTTGCAG
GAGTAAGGGGGTATCGCACTGTAGTTTTTATTTGCATTTCCCTGATCATTAGTGATGTTGAGCATTTTTTCATACTTTGTTGGCCATTTGTATATCTTCT
TTTGAGAATTGTCTATTCATGTCCTTAACCCACTTTTTGATGGGATTGTTTGTTTTTTTCTTACTGATTTGTTTGAGTTTGTTGTAGATTCTGGATATTA
GTCCTTTGTCTGATGTATAGATTGTGAAGATTTTCTCCCACTCTGTGCGTTGTCTGTTTACTCTGCTGACTGTTGCTTTTACCATGCAAAAGCTCTTTAG
TTTAATTAAGTCCCATCTATTTATCTTTGTTTTTATTGTTGGAAACTATTATTCTAAGTTAAGTAACTCAGGAATGGAAAACCAAACAACCTATGTTCTC
ATTGATATGTGGGAGCTAAGCTATGAGGACACAAAGGCATAAGAATGGTACAATGGACTTTGGGGACTTGGGGGGAAGGGTAAGGGGGGGTGAGGAATAA
AAGACAACATATATGGTATAGTATATACTACTCAGGAGATGGGTGCACCAGGATCTCACAAATCACCACTAAAGAATTTACTCATGTAACCAAATACCAC
CTGTACCCCCAATAACTTATGGGAAAAAAAGATATTCATCGACCTATTCCAGGTCCTCTCTCCACCACTGAGCCTCGTGGGGACATAAAGAGCTGCCTGC
CCTCCCCTGTTCCCCTTGCCTTTTTGCAGCAGGATTCCTGAAAATGTTGACTTACAGATACGTTTTTGAGATATGAACGTTTGTTATTTCCTGGTGCTTA
GGGAAGAAAATAATTGATGTTGTGAGTTGGGCGGGACTTTAGGGACTATGCTGAACAATCCACTGACCACTGCAGGCTCCCATTTATGATCTTGGGCCAA
CAGCCACCAGCCTCTGTTCATGCAGTCTCACTGAGGGCAGTTACTTCTTTGGAGTGGCATGCCTCTGAGCAGATAATTCCAATAATCAATGTCAAACTAG
ATATTGAAACAGCCCAAGTGTCCTGGTAAAGCTAGCTGTTGATACTCCTGACTGTTGCATTATTTTGTTTTTTGTTTTGTTTTGTTTTGAGACGGAGTCT
TGCTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCAAGCTGTGCCTCCCGGGTTCAAACAATTCTTCTGCCTCAGCCTCCCGAGTA
GCTGGGATTACAGGTGCATGCCACCATGCCCAGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGGCTGGTCTTGAACTCCTGAC
CTCAAGTGATCCACCCACCTTGGCCTCCCAAGGTGCTGGGATTACAGGCACAAGCCACAGCTCCCGGCCCAACTGTTGCATTATTATTTGCAAATGTTGG
CTATCCCTGCTGTTGTCTATATATCAATTTTGTCTACCCAACACAGCTGTAAACTTCTCAAGGTGAGGAGTGAGCCATCACTCTTTGCACCTCTTGCTGT
GATTGACATGGTATACCTTAAGATATATGTTAATTCCTATGTCTTAATAAATATTGGCTTATGGAGAATTTGTTGGAGCAAGTACAGACCCTATGTTTAA
CTTCTTTTATTCAACAGAATTAAAAAACTAGCTAGTTCTCTCAATAAAATAATACTTTCTTTTCTTTCTTAAAATCTAGCTGATCTGGTCTAAAATACAC
ATGTGGGAGGCGGGATTGTAGAAATATCTCAAATTAATTAGCGTCTAGCTCTTTGTAAGGTAATTGACAGTCTGAGTTAGTTGCTTCCCCCACTGCAAAG
CAGCAAAATCTGCTCTCAAAGGCTTCACGTAGCCGGGAAAACTCCGTTCCCAATTCAGATCCTCTGGGGAGGGCATCAATTATTTCCTATTGTTTTTAGC
ACCGATTGTTCTGTCTAATTTGAAAGGATCCAAAAAAGGAAATGATACTTGGCATTAGTATCATTCTCCATCACTCTTGAAAGATATATGAAGGGAATGT
TGGCGCAATCAGTCTAGAAACATATTTCTCCCATAACAATAAGCCAGTTCTTTTTGCTTTGAATCAGAAATAGCTCCATCAGGCCCATGAAGGAAAGGGA
AACAAAACTGAGTGCCAAGCATATGATAACATGCTCAGCATCATATGACATTAGGGGATTGCAAATTGAAACAACAGTACCACCACACACCTATCAGAAT
GGCCAAAATCCAGAAGACTGACATCACCAATGCTAGTGAGAATGTGGAGCAACAGGAACTCTCATTCACGGCTGGTGGGGATGCAAAGTGGTGGAGCCAC
TTGGGAAGACAGTCTGGCAGATTCCTAAAAAGGTAAACATACTCTTACTAAACAATCTAGTAGATTTGCTCCTAGGTGTTTACCCAAAGGAGTTGAAAAC
ATGTCCACACAGAAAACCTGCACATGAATGTTTATAGCAGCTTTACTCAAAATTGCCAAAAATTGGAAGCAACCAAGATGTCCTTCAATAGGTGGGCGGA
TAAAGAAATTGTATCCAATTCTATTTCTATGAGGAAAATCTATTCATACAATAGAATACTAGTGTCAGAGATTTTTTTTTAACAAAGAGCTATCAAGCCA
TGAAAAGATAAGGAAGAACTTTAATGCATATTGGTAAGTGAAAAAAGCCAGTTTGCAAAGGCTAGATACTATATGATCCCAACTGTATAACATTCTGAAA
AAGGCACAACTATGGAGACAATAAAAAGAACAGAGTTTTGGATGAAGGGAGGGATGAACAGGCAGAATACAAACAAATTTTAGGGCAGTGAAACTATTAT
TATGATACTTTATGGATATAGAATATTATGCATTTTTCAAAACACATAGAATATACAACATGAAGAATGAATGCTAATGTAAACTCTGGATTTTTATTAA
TAATATTATTTAATTAAAATGATTTATTTTACTTATTTTCATTATTATCTAAAATGTTATTTAATTATTAAATTTAGATGCTACTTAATTTTTGCTTTAT
TATTATTATGTTAATATCATCAACTGTAACTAGTGTACAACACTAATGCAAGATGTTAATAGGGGAAATCGTGTTGGAGAGAGAGATATGTGAGAACTCT
GTACTTTCTTTTCAATGTTTCTGTAAACATAAAGCTGCTCTAAAAAATTAAATCTATTAAAAAAAAAACTGAGTGGAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.